Hierarchy For All Packages

Package Hierarchies:

• HAL,
• HAL.GridsAndAgents,
• HAL.Gui,
• HAL.Interfaces,
• HAL.Tools,
• HAL.Tools.InteractiveModel,
• HAL.Tools.Internal,
• HAL.Tools.Modularity,
• HAL.Tools.MultiWellExperiment,
• HAL.Tools.ODESolver,
• HAL.Tools.PhylogenyTracker

Class Hierarchy

• java.lang.Object
  • HAL.Tools.Internal.ADIequations
  • HAL.GridsAndAgents.AgentBase<T> (implements java.io.Serializable)
    • HAL.GridsAndAgents.Agent0D<T> (implements java.io.Serializable)
    • HAL.GridsAndAgents.AgentBaseSpatial<T> (implements java.io.Serializable)
      • HAL.GridsAndAgents.Agent1DBase<T> (implements java.io.Serializable)
        • HAL.GridsAndAgents.AgentPT1D<T> (implements java.io.Serializable)
        • HAL.GridsAndAgents.AgentSQ1D<T> (implements java.io.Serializable)
        • HAL.GridsAndAgents.AgentSQ1Dunstackable<T> (implements java.io.Serializable)
      • HAL.GridsAndAgents.Agent2DBase<T> (implements java.io.Serializable)
        • HAL.GridsAndAgents.AgentPT2D<T> (implements java.io.Serializable)
          • HAL.GridsAndAgents.SphericalAgent2D<A,G> (implements java.io.Serializable)
        • HAL.GridsAndAgents.AgentSQ2D<T> (implements java.io.Serializable)
        • HAL.GridsAndAgents.AgentSQ2Dunstackable<T> (implements java.io.Serializable)
      • HAL.GridsAndAgents.Agent3DBase<T> (implements java.io.Serializable)
        • HAL.GridsAndAgents.AgentPT3D<T> (implements java.io.Serializable)
          • HAL.GridsAndAgents.SphericalAgent3D<A,G> (implements java.io.Serializable)
        • HAL.GridsAndAgents.AgentSQ3D<T> (implements java.io.Serializable)
        • HAL.GridsAndAgents.AgentSQ3Dunstackable<T> (implements java.io.Serializable)
  • HAL.GridsAndAgents.AgentGrid0D<T> (implements java.lang.Iterable<T>, java.io.Serializable)
  • HAL.GridsAndAgents.AgentGrid1D<T> (implements HAL.Interfaces.Grid1D, java.lang.Iterable<T>, java.io.Serializable)
  • HAL.GridsAndAgents.AgentGrid2D<T> (implements HAL.Interfaces.Grid2D, java.lang.Iterable<T>, java.io.Serializable)
  • HAL.GridsAndAgents.AgentGrid3D<T> (implements HAL.Interfaces.Grid3D, java.lang.Iterable<T>, java.io.Serializable)
  • HAL.GridsAndAgents.AgentList<T> (implements java.lang.Iterable<T>, java.io.Serializable)
  • HAL.Tools.Internal.Binomial (implements java.io.Serializable)
  • HAL.Tools.BoolSet
  • java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    • java.awt.Container
      • javax.swing.JComponent (implements java.io.Serializable)
        • javax.swing.AbstractButton (implements java.awt.ItemSelectable, javax.swing.SwingConstants)
          • javax.swing.JButton (implements javax.accessibility.Accessible)
            • HAL.Gui.UIButton (implements HAL.Interfaces.GuiComp)
            • HAL.Gui.UIFileChooserInput (implements HAL.Interfaces.GuiComp, HAL.Interfaces.MenuItem)
          • javax.swing.JToggleButton (implements javax.accessibility.Accessible)
            • HAL.Gui.UIBoolInput (implements HAL.Interfaces.GuiComp, HAL.Interfaces.MenuItem)
        • javax.swing.JComboBox<E> (implements javax.accessibility.Accessible, java.awt.event.ActionListener, java.awt.ItemSelectable, javax.swing.event.ListDataListener)
          • HAL.Gui.UIComboBoxInput (implements HAL.Interfaces.GuiComp, HAL.Interfaces.MenuItem)
        • javax.swing.text.JTextComponent (implements javax.accessibility.Accessible, javax.swing.Scrollable)
          • javax.swing.JTextField (implements javax.swing.SwingConstants)
            • javax.swing.JFormattedTextField
              • HAL.Gui.UIDoubleInput (implements HAL.Interfaces.GuiComp, HAL.Interfaces.MenuItem)
              • HAL.Gui.UIIntInput (implements HAL.Interfaces.GuiComp, HAL.Interfaces.MenuItem)
            • HAL.Gui.UIStringInput (implements HAL.Interfaces.GuiComp, HAL.Interfaces.MenuItem)
  • HAL.Tools.FileIO
  • HAL.Tools.Internal.Gaussian (implements java.io.Serializable)
  • HAL.Tools.PhylogenyTracker.Genome<T> (implements java.lang.Iterable<T>)
  • HAL.Gui.GifMaker
  • HAL.GridsAndAgents.Grid1Ddouble (implements HAL.Interfaces.Grid1D, java.io.Serializable)
  • HAL.GridsAndAgents.Grid1Dint (implements HAL.Interfaces.Grid1D, java.io.Serializable)
  • HAL.GridsAndAgents.Grid1Dlong (implements HAL.Interfaces.Grid1D, java.io.Serializable)
  • HAL.GridsAndAgents.Grid1Dobject<T> (implements HAL.Interfaces.Grid1D, java.io.Serializable)
  • HAL.GridsAndAgents.Grid2Ddouble (implements HAL.Interfaces.Grid2D, java.io.Serializable)
  • HAL.GridsAndAgents.Grid2Dint (implements HAL.Interfaces.Grid2D, java.io.Serializable)
  • HAL.GridsAndAgents.Grid2Dlong (implements HAL.Interfaces.Grid2D, java.io.Serializable)
  • HAL.GridsAndAgents.Grid2Dobject<T> (implements HAL.Interfaces.Grid2D, java.io.Serializable)
  • HAL.GridsAndAgents.Grid3Ddouble (implements HAL.Interfaces.Grid3D, java.io.Serializable)
  • HAL.GridsAndAgents.Grid3Dint (implements HAL.Interfaces.Grid3D, java.io.Serializable)
  • HAL.GridsAndAgents.Grid3Dlong (implements HAL.Interfaces.Grid3D, java.io.Serializable)
  • HAL.GridsAndAgents.Grid3Dobject<T> (implements HAL.Interfaces.Grid3D, java.io.Serializable)
  • HAL.Tools.Internal.KeyRecorder
  • HAL.Tools.Modularity.ModuleSetManager<baseModule>
  • HAL.Tools.MultiWellExperiment.MultiWellExperiment<T>
  • HAL.Tools.ODESolver.ODESolver (implements java.io.Serializable)
  • HAL.Gui.OpenGL2DWindow (implements HAL.Interfaces.Grid2D)
  • HAL.Gui.OpenGL3DWindow (implements HAL.Interfaces.Grid3D)
  • HAL.Tools.Internal.ParamSet
  • HAL.Tools.Internal.PDEequations
  • HAL.GridsAndAgents.PDEGrid1D (implements HAL.Interfaces.Grid1D, java.io.Serializable)
  • HAL.GridsAndAgents.PDEGrid2D (implements HAL.Interfaces.Grid2D, java.io.Serializable)
  • HAL.GridsAndAgents.PDEGrid3D (implements HAL.Interfaces.Grid3D, java.io.Serializable)
  • HAL.Gui.PlotLine (implements java.io.Serializable)
  • HAL.GridsAndAgents.PopulationGridBase (implements java.lang.Iterable<T>)
    • HAL.GridsAndAgents.PopulationGrid1D (implements HAL.Interfaces.Grid1D)
    • HAL.GridsAndAgents.PopulationGrid2D (implements HAL.Interfaces.Grid2D)
    • HAL.GridsAndAgents.PopulationGrid3D (implements HAL.Interfaces.Grid3D)
  • HAL.GridsAndAgents.PopulationGridLongBase (implements java.lang.Iterable<T>)
    • HAL.GridsAndAgents.PopulationGrid1DLong (implements HAL.Interfaces.Grid1D)
    • HAL.GridsAndAgents.PopulationGrid2DLong (implements HAL.Interfaces.Grid2D)
    • HAL.GridsAndAgents.PopulationGrid3DLong (implements HAL.Interfaces.Grid3D)
  • HAL.Tools.Internal.PopulationGridPDEequations
  • HAL.Rand (implements java.io.Serializable)
    • HAL.Tools.MultinomialCalc (implements java.io.Serializable)
    • HAL.Tools.MultinomialCalcLong (implements java.io.Serializable)
  • HAL.Tools.Internal.SplittableRN (implements HAL.Interfaces.RNG, java.io.Serializable)
  • HAL.Tools.Internal.SweepRun<T> (implements java.lang.Runnable)
  • HAL.Tools.TdmaSolver (implements java.io.Serializable)
  • HAL.Gui.TickTimer
  • HAL.Gui.UIGrid (implements HAL.Interfaces.Grid2D, HAL.Interfaces.GuiComp)
    • HAL.Gui.GridWindow
  • HAL.Gui.UILabel (implements HAL.Interfaces.GuiComp)
  • HAL.Gui.UIPlot (implements HAL.Interfaces.GuiComp, java.io.Serializable)
    • HAL.Gui.PlotWindow
  • HAL.Gui.UIWindow
    • HAL.Tools.InteractiveModel.InteractiveModel
  • HAL.Util
  • HAL.Tools.Modularity.VarSetManager (implements java.io.Serializable)

Interface Hierarchy

• HAL.Interfaces.AgentAction<T>
• HAL.Interfaces.AgentRadDispToAction1D<T>
• HAL.Interfaces.AgentRadDispToAction2D<T>
• HAL.Interfaces.AgentRadDispToAction3D<T>
• HAL.Interfaces.AgentStepFunction<T>
• HAL.Interfaces.AgentToBool<T>
• HAL.Interfaces.AgentToColorInt<T>
• HAL.Interfaces.AgentToDouble<T>
• HAL.Interfaces.AgentToInts<T>
• HAL.Interfaces.AgentToString<T>
• HAL.Interfaces.ButtonAction
• HAL.Interfaces.ColorIntGenerator
• HAL.Interfaces.Coords1DBool
• HAL.Interfaces.Coords1DDouble
• HAL.Interfaces.Coords1DInt
• HAL.Interfaces.Coords2DAction
• HAL.Interfaces.Coords2DBool
• HAL.Interfaces.Coords2DColor
• HAL.Interfaces.Coords2DDouble
• HAL.Interfaces.Coords2DInt
• HAL.Interfaces.Coords2DSetArray
• HAL.Interfaces.Coords3DAction
• HAL.Interfaces.Coords3DBool
• HAL.Interfaces.Coords3DDouble
• HAL.Interfaces.Coords3DInt
• HAL.Interfaces.Coords3DSetArray
• HAL.Interfaces.Coords6DDouble
• HAL.Interfaces.CustomSerialization
• HAL.Tools.ODESolver.Derivative
• HAL.Interfaces.DistToForceMap
• HAL.Interfaces.DoubleArrayToDouble
• HAL.Interfaces.DoubleArrayToVoid
• HAL.Interfaces.Doubles2DDouble
• HAL.Interfaces.Doubles3DDouble
• HAL.Interfaces.DoublesToColor
• HAL.Interfaces.DoubleToAction
• HAL.Interfaces.DoubleToColor
• HAL.Interfaces.DoubleToDouble
• HAL.Interfaces.DoubleToDoubles
• HAL.Interfaces.DoubleToInt
• HAL.Interfaces.DrawFunction
• HAL.Tools.MultiWellExperiment.DrawWell<T>
• HAL.Interfaces.GAMutantToString<T>
• HAL.Interfaces.GAMutationFunction<T>
• HAL.Interfaces.GAScoreFunction<T>
• HAL.Interfaces.GenDouble
• HAL.Tools.PhylogenyTracker.GenomeFn<T>
• HAL.Tools.PhylogenyTracker.GenomeLineageFn<T>
• HAL.Interfaces.GetGenomeAttrs<T>
• HAL.Interfaces.GetMutationInfo<T>
• HAL.Interfaces.Grid1D
• HAL.Interfaces.Grid2D
• HAL.Interfaces.Grid3D
• HAL.Interfaces.GridDiff2MultiThreadFunction
• HAL.Interfaces.GuiCloseAction
• HAL.Interfaces.GuiComp
• HAL.Interfaces.IndexAction
• HAL.Interfaces.IndexBool
• HAL.Interfaces.IndexCoords2DAction
• HAL.Interfaces.IndexCoords2DBool
• HAL.Interfaces.IndexCoords2DDouble
• HAL.Interfaces.IndexCoords3DAction
• HAL.Interfaces.IndexCoords3DBool
• HAL.Interfaces.IndexIntAction
• HAL.Interfaces.IndexIntToAction
• HAL.Interfaces.IndexLongAction
• HAL.Interfaces.IntDoubleToVoid
• HAL.Interfaces.IntToBool
• HAL.Interfaces.IntToDouble
• HAL.Interfaces.IntToInt
• HAL.Interfaces.IsEntry1Before2
• HAL.Interfaces.KeyResponse
• HAL.Interfaces.LocalIndexAction
• HAL.Interfaces.MenuItem
• HAL.Interfaces.OdeSolution
• HAL.Interfaces.OverlapForceResponse2D<T>
• HAL.Interfaces.OverlapForceResponse3D<T>
• HAL.Interfaces.ParallelFunction
• HAL.Interfaces.ParamSetChangeAction
• HAL.Interfaces.Point1DBool
• HAL.Interfaces.Point2DBool
• HAL.Interfaces.Point3DBool
• HAL.Interfaces.RNG
• java.io.Serializable
  • HAL.Interfaces.SerializableModel
    • HAL.Tools.InteractiveModel.TreatableTumor
• HAL.Interfaces.Sortable
• HAL.Tools.MultiWellExperiment.StepWell<T>
• HAL.Interfaces.SwapEntries
• HAL.Tools.Modularity.VarSet
• HAL.Interfaces.VoidFunction