Serialized Form

Package HAL

Class HAL.Rand extends java.lang.Object implements Serializable

Serialized Fields

bn

Binomial bn

gn

Gaussian gn

rn

RNG rn

Package HAL.GridsAndAgents

Class HAL.GridsAndAgents.Agent0D extends AgentBase<T extends AgentGrid0D> implements Serializable

Class HAL.GridsAndAgents.Agent1DBase extends AgentBaseSpatial<T extends AgentGrid1D> implements Serializable

Class HAL.GridsAndAgents.Agent2DBase extends AgentBaseSpatial<T extends AgentGrid2D> implements Serializable

Class HAL.GridsAndAgents.Agent3DBase extends AgentBaseSpatial<T extends AgentGrid3D> implements Serializable

Class HAL.GridsAndAgents.AgentBase extends java.lang.Object implements Serializable

Serialized Fields

alive

boolean alive

birthTick

int birthTick

G

T G

returns the grid that the agent belongs to (this is a permanent agent property, not a function)

iList

int iList

myNodes

HAL.GridsAndAgents.AgentListNode myNodes

stateID

long stateID

Class HAL.GridsAndAgents.AgentBaseSpatial extends AgentBase<T> implements Serializable

Serialized Fields

iSq

int iSq

Class HAL.GridsAndAgents.AgentGrid0D extends java.lang.Object implements Serializable

Serialized Fields

agents

HAL.GridsAndAgents.InternalGridAgentList<T extends Agent0D> agents

tick

int tick

Class HAL.GridsAndAgents.AgentGrid1D extends java.lang.Object implements Serializable

Serialized Fields

agents

HAL.GridsAndAgents.InternalGridAgentList<T extends AgentBaseSpatial> agents

counts

int[] counts

grid

T extends AgentBaseSpatial[] grid

length

int length

moveSafeXdim

double moveSafeXdim

tick

int tick

usedAgentSearches

java.util.ArrayList<java.util.ArrayList<T extends AgentBaseSpatial>> usedAgentSearches

usedIterIs

java.util.ArrayList<HAL.GridsAndAgents.AgentGrid1D.AgentsIterator1D> usedIterIs

wrapX

boolean wrapX

xDim

int xDim

Class HAL.GridsAndAgents.AgentGrid2D extends java.lang.Object implements Serializable

Serialized Fields

agents

HAL.GridsAndAgents.InternalGridAgentList<T extends AgentBaseSpatial> agents

counts

int[] counts

grid

T extends AgentBaseSpatial[] grid

length

int length

moveSafeXdim

double moveSafeXdim

moveSafeYdim

double moveSafeYdim

tick

int tick

usedAgentSearches

java.util.ArrayList<java.util.ArrayList<T extends AgentBaseSpatial>> usedAgentSearches

usedIterIs

java.util.ArrayList<HAL.GridsAndAgents.AgentGrid2D.AgentsIterator2D> usedIterIs

wrapX

boolean wrapX

wrapY

boolean wrapY

xDim

int xDim

yDim

int yDim

Class HAL.GridsAndAgents.AgentGrid3D extends java.lang.Object implements Serializable

Serialized Fields

agents

HAL.GridsAndAgents.InternalGridAgentList<T extends AgentBaseSpatial> agents

counts

int[] counts

grid

T extends AgentBaseSpatial[] grid

iagentSearch

int iagentSearch

length

int length

moveSafeXdim

double moveSafeXdim

moveSafeYdim

double moveSafeYdim

moveSafeZdim

double moveSafeZdim

tick

int tick

usedAgentSearches

java.util.ArrayList<java.util.ArrayList<T extends AgentBaseSpatial>> usedAgentSearches

usedIterIs

java.util.ArrayList<HAL.GridsAndAgents.AgentGrid3D.AgentsIterator3D> usedIterIs

wrapX

boolean wrapX

wrapY

boolean wrapY

wrapZ

boolean wrapZ

xDim

int xDim

yDim

int yDim

zDim

int zDim

Class HAL.GridsAndAgents.AgentList extends java.lang.Object implements Serializable

Serialized Fields

deads

java.util.ArrayList<HAL.GridsAndAgents.AgentListNode<T>> deads

iLastAlive

int iLastAlive

nodes

java.util.ArrayList<HAL.GridsAndAgents.AgentListNode<T>> nodes

pop

int pop

stateID

long stateID

usedIters

java.util.ArrayList<HAL.GridsAndAgents.AgentList.myIter> usedIters

Class HAL.GridsAndAgents.AgentPT1D extends Agent1DBase<T extends AgentGrid1D> implements Serializable

Serialized Fields

nextSq

AgentPT1D nextSq

prevSq

AgentPT1D prevSq

ptX

double ptX

Class HAL.GridsAndAgents.AgentPT2D extends Agent2DBase<T extends AgentGrid2D> implements Serializable

Serialized Fields

nextSq

AgentPT2D nextSq

prevSq

AgentPT2D prevSq

ptX

double ptX

ptY

double ptY

Class HAL.GridsAndAgents.AgentPT3D extends Agent3DBase<T extends AgentGrid3D> implements Serializable

Serialized Fields

nextSq

AgentPT3D nextSq

prevSq

AgentPT3D prevSq

xPos

double xPos

yPos

double yPos

zPos

double zPos

Class HAL.GridsAndAgents.AgentSQ1D extends Agent1DBase<T extends AgentGrid1D> implements Serializable

Serialized Fields

nextSq

AgentSQ1D nextSq

prevSq

AgentSQ1D prevSq

Class HAL.GridsAndAgents.AgentSQ1Dunstackable extends Agent1DBase<T extends AgentGrid1D> implements Serializable

Class HAL.GridsAndAgents.AgentSQ2D extends Agent2DBase<T extends AgentGrid2D> implements Serializable

Serialized Fields

nextSq

AgentSQ2D nextSq

prevSq

AgentSQ2D prevSq

xSq

int xSq

ySq

int ySq

Class HAL.GridsAndAgents.AgentSQ2Dunstackable extends Agent2DBase<T extends AgentGrid2D> implements Serializable

Serialized Fields

xSq

int xSq

ySq

int ySq

Class HAL.GridsAndAgents.AgentSQ3D extends Agent3DBase<T extends AgentGrid3D> implements Serializable

Serialized Fields

nextSq

AgentSQ3D nextSq

prevSq

AgentSQ3D prevSq

xSq

int xSq

ySq

int ySq

zSq

int zSq

Class HAL.GridsAndAgents.AgentSQ3Dunstackable extends Agent3DBase<T extends AgentGrid3D> implements Serializable

Serialized Fields

xSq

int xSq

ySq

int ySq

zSq

int zSq

Class HAL.GridsAndAgents.Grid1Ddouble extends java.lang.Object implements Serializable

Serialized Fields

field

double[] field

length

int length

wrapX

boolean wrapX

xDim

int xDim

Class HAL.GridsAndAgents.Grid1Dint extends java.lang.Object implements Serializable

Serialized Fields

field

int[] field

length

int length

wrapX

boolean wrapX

xDim

int xDim

Class HAL.GridsAndAgents.Grid1Dlong extends java.lang.Object implements Serializable

Serialized Fields

field

long[] field

length

int length

wrapX

boolean wrapX

xDim

int xDim

Class HAL.GridsAndAgents.Grid1Dobject extends java.lang.Object implements Serializable

Serialized Fields

field

T[] field

length

int length

wrapX

boolean wrapX

xDim

int xDim

Class HAL.GridsAndAgents.Grid2Ddouble extends java.lang.Object implements Serializable

Serialized Fields

field

double[] field

length

int length

wrapX

boolean wrapX

wrapY

boolean wrapY

xDim

int xDim

yDim

int yDim

Class HAL.GridsAndAgents.Grid2Dint extends java.lang.Object implements Serializable

Serialized Fields

field

int[] field

length

int length

wrapX

boolean wrapX

wrapY

boolean wrapY

xDim

int xDim

yDim

int yDim

Class HAL.GridsAndAgents.Grid2Dlong extends java.lang.Object implements Serializable

Serialized Fields

field

long[] field

length

int length

wrapX

boolean wrapX

wrapY

boolean wrapY

xDim

int xDim

yDim

int yDim

Class HAL.GridsAndAgents.Grid2Dobject extends java.lang.Object implements Serializable

Serialized Fields

field

T[] field

length

int length

wrapX

boolean wrapX

wrapY

boolean wrapY

xDim

int xDim

yDim

int yDim

Class HAL.GridsAndAgents.Grid3Ddouble extends java.lang.Object implements Serializable

Serialized Fields

field

double[] field

length

int length

wrapX

boolean wrapX

wrapY

boolean wrapY

wrapZ

boolean wrapZ

xDim

int xDim

yDim

int yDim

zDim

int zDim

Class HAL.GridsAndAgents.Grid3Dint extends java.lang.Object implements Serializable

Serialized Fields

field

int[] field

length

int length

wrapX

boolean wrapX

wrapY

boolean wrapY

wrapZ

boolean wrapZ

xDim

int xDim

yDim

int yDim

zDim

int zDim

Class HAL.GridsAndAgents.Grid3Dlong extends java.lang.Object implements Serializable

Serialized Fields

field

long[] field

length

int length

wrapX

boolean wrapX

wrapY

boolean wrapY

wrapZ

boolean wrapZ

xDim

int xDim

yDim

int yDim

zDim

int zDim

Class HAL.GridsAndAgents.Grid3Dobject extends java.lang.Object implements Serializable

Serialized Fields

field

T[] field

length

int length

wrapX

boolean wrapX

wrapY

boolean wrapY

wrapZ

boolean wrapZ

xDim

int xDim

yDim

int yDim

zDim

int zDim

Class HAL.GridsAndAgents.PDEGrid1D extends java.lang.Object implements Serializable

Serialized Fields

adiOrder

boolean adiOrder

adiX

boolean adiX

deltas

double[] deltas

field

double[] field

length

int length

maxDifscratch

double[] maxDifscratch

scratch

double[] scratch

tdma

TdmaSolver tdma

updateCt

int updateCt

wrapX

boolean wrapX

xDim

int xDim

Class HAL.GridsAndAgents.PDEGrid2D extends java.lang.Object implements Serializable

Serialized Fields

adiOrder

boolean adiOrder

adiX

boolean adiX

deltas

double[] deltas

field

double[] field

length

int length

maxDifscratch

double[] maxDifscratch

scratch

double[] scratch

scratchField1

double[] scratchField1

scratchField2

double[] scratchField2

tdma

TdmaSolver tdma

updateCt

int updateCt

wrapX

boolean wrapX

wrapY

boolean wrapY

xDim

int xDim

yDim

int yDim

Class HAL.GridsAndAgents.PDEGrid3D extends java.lang.Object implements Serializable

Serialized Fields

deltas

double[] deltas

field

double[] field

length

int length

maxDifscratch

double[] maxDifscratch

scratch

double[] scratch

scratch2

double[] scratch2

tdma

TdmaSolver tdma

updateCt

int updateCt

wrapX

boolean wrapX

wrapY

boolean wrapY

wrapZ

boolean wrapZ

xDim

int xDim

yDim

int yDim

zDim

int zDim

Class HAL.GridsAndAgents.SphericalAgent2D extends AgentPT2D<G extends AgentGrid2D<A>> implements Serializable

Serialized Fields

radius

double radius

xVel

double xVel

yVel

double yVel

Class HAL.GridsAndAgents.SphericalAgent3D extends AgentPT3D<G extends AgentGrid3D<A>> implements Serializable

Serialized Fields

radius

double radius

xVel

double xVel

yVel

double yVel

zVel

double zVel

Package HAL.Gui

Class HAL.Gui.PlotLine extends java.lang.Object implements Serializable

Serialized Fields

clearState

int clearState

color

int color

first

HAL.Gui.PlotPointInternal first

last

HAL.Gui.PlotPointInternal last

myPlot

UIPlot myPlot

Class HAL.Gui.PlotWindow extends UIPlot implements Serializable

Serialized Fields

win

UIWindow win

Class HAL.Gui.UIBoolInput extends javax.swing.JToggleButton implements Serializable

Serialized Fields

compX

int compX

compY

int compY

initVal

java.lang.String initVal

Class HAL.Gui.UIButton extends javax.swing.JButton implements Serializable

Serialized Fields

compX

int compX

compY

int compY

myAction

ButtonAction myAction

newThread

boolean newThread

runThread

java.lang.Thread runThread

Class HAL.Gui.UIComboBoxInput extends javax.swing.JComboBox implements Serializable

Serialized Fields

compX

int compX

compY

int compY

initVal

java.lang.String initVal

label

javax.swing.JLabel label

labelText

java.lang.String labelText

Class HAL.Gui.UIDoubleInput extends javax.swing.JFormattedTextField implements Serializable

Serialized Fields

compX

int compX

compY

int compY

initValue

java.lang.String initValue

label

javax.swing.JLabel label

labelText

java.lang.String labelText

max

double max

min

double min

Class HAL.Gui.UIFileChooserInput extends javax.swing.JButton implements Serializable

Serialized Fields

browser

javax.swing.JFileChooser browser

compX

int compX

compY

int compY

initValue

java.lang.String initValue

label

javax.swing.JLabel label

labelText

java.lang.String labelText

win

UIWindow win

Class HAL.Gui.UIIntInput extends javax.swing.JFormattedTextField implements Serializable

Serialized Fields

compX

int compX

compY

int compY

initVal

java.lang.String initVal

label

javax.swing.JLabel label

labelText

java.lang.String labelText

max

int max

min

int min

Class HAL.Gui.UIPlot extends java.lang.Object implements Serializable

Serialized Fields

AdditionalDraws

DrawFunction AdditionalDraws

axColor

int axColor

bkColor

int bkColor

clearState

int clearState

clickAlphaGrid

UIGrid clickAlphaGrid

clickOn

boolean clickOn

deadPoints

HAL.Gui.PlotPointInternal deadPoints

first

HAL.Gui.PlotPointInternal first

form

java.text.NumberFormat form

grid

UIGrid grid

last

HAL.Gui.PlotPointInternal last

plotScaleX

double plotScaleX

plotScaleY

double plotScaleY

plotXend

double plotXend

plotXstart

double plotXstart

plotYend

double plotYend

plotYstart

double plotYstart

Class HAL.Gui.UIStringInput extends javax.swing.JTextField implements Serializable

Serialized Fields

compX

int compX

compY

int compY

initVal

java.lang.String initVal

label

javax.swing.JLabel label

labelText

java.lang.String labelText

nCols

int nCols

Package HAL.Interfaces

Package HAL.Tools

Class HAL.Tools.MultinomialCalc extends Rand implements Serializable

Serialized Fields

popRemaining

int popRemaining

probRemaining

double probRemaining

Class HAL.Tools.MultinomialCalcLong extends Rand implements Serializable

Serialized Fields

popRemaining

long popRemaining

probRemaining

double probRemaining

Class HAL.Tools.TdmaSolver extends java.lang.Object implements Serializable

Serialized Fields

AS

int AS

BS

int BS

CS

int CS

DS

int DS

scratch

double[] scratch

scratchLen

int scratchLen

WS

int WS

YS

int YS

ZS

int ZS

Package HAL.Tools.InteractiveModel

Package HAL.Tools.Internal

Class HAL.Tools.Internal.Binomial extends java.lang.Object implements Serializable

Serialized Fields

b

int b

bL

long bL

c

double c

ch

double ch

ll

double ll

log_n

double log_n

log_p

double log_p

log_q

double log_q

lr

double lr

m

int m

mL

long mL

n

int n

n_last

int n_last

n_lastL

long n_lastL

n_prev

int n_prev

n_prevL

long n_prevL

nm

int nm

nmL

long nmL

np

double np

p

double p

p_last

double p_last

p_prev

double p_prev

p0

double p0

p1

double p1

p2

double p2

p3

double p3

p4

double p4

par

double par

pq

double pq

q

double q

rc

double rc

ss

double ss

xl

double xl

xm

double xm

xr

double xr

Class HAL.Tools.Internal.Gaussian extends java.lang.Object implements Serializable

Serialized Fields

phase

double phase

S

double S

V1

double V1

V2

double V2

Class HAL.Tools.Internal.SplittableRN extends java.lang.Object implements Serializable

Serialized Fields

gamma

long gamma

The step value.

seed

long seed

The seed. Updated only via method nextSeed.

Package HAL.Tools.Modularity

Class HAL.Tools.Modularity.VarSetManager extends java.lang.Object implements Serializable

Serialized Fields

nParams

int nParams

setup

boolean setup

Package HAL.Tools.ODESolver

Class HAL.Tools.ODESolver.ODESolver extends java.lang.Object implements Serializable

Serialized Fields

lenSet

int lenSet

numSet

int numSet

s0

double[] s0

s1

double[] s1

s2

double[] s2

s3

double[] s3

s4

double[] s4

s5

double[] s5

s6

double[] s6

s7

double[] s7

s8

double[] s8

scratches

java.util.ArrayList<double[][]> scratches