A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _
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- Sample(double) - Method in class HAL.Tools.MultinomialCalc
- Sample(double) - Method in class HAL.Tools.MultinomialCalcLong
- Sample(double, double, Rand) - Method in class HAL.Tools.Internal.Gaussian
- SampleInt(int, double, Rand) - Method in class HAL.Tools.Internal.Binomial
- SampleIntFast(int, double, Rand) - Method in class HAL.Tools.Internal.Binomial
- SampleLong(long, double, Rand) - Method in class HAL.Tools.Internal.Binomial
- SaveState(SerializableModel) - Static method in class HAL.Util
-
Saves a model state to a byte array and returns it.
- SaveState(SerializableModel, String) - Static method in class HAL.Util
-
Saves a model state to a file with the name specified.
- scale - Variable in class HAL.Gui.UIGrid
- Scale(int, double) - Method in class HAL.GridsAndAgents.Grid1Ddouble
-
multiplies the current field value at the specified index
- Scale(int, double) - Method in class HAL.GridsAndAgents.Grid1Dint
-
multiplies the current field value at the specified index
- Scale(int, double) - Method in class HAL.GridsAndAgents.Grid2Ddouble
-
multiplies the current field value at the specified index
- Scale(int, double) - Method in class HAL.GridsAndAgents.Grid2Dint
-
multiplies the current field value at the specified index
- Scale(int, double) - Method in class HAL.GridsAndAgents.Grid2Dlong
-
multiplies the current field value at the specified index
- Scale(int, double) - Method in class HAL.GridsAndAgents.Grid3Ddouble
-
multiplies the current field value at the specified index
- Scale(int, double) - Method in class HAL.GridsAndAgents.Grid3Dint
-
multiplies the current field value at the specified index
- Scale(int, double) - Method in class HAL.GridsAndAgents.Grid3Dlong
-
multiplies the current field value at the specified index
- Scale(int, int, double) - Method in class HAL.GridsAndAgents.Grid2Ddouble
-
multiplies the current field value at the specified coordinates
- Scale(int, int, double) - Method in class HAL.GridsAndAgents.Grid2Dint
-
multiplies the current field value at the specified coordinates
- Scale(int, int, double) - Method in class HAL.GridsAndAgents.Grid2Dlong
-
multiplies the current field value at the specified coordinates
- Scale(int, int, int, double) - Method in class HAL.GridsAndAgents.Grid3Ddouble
-
multiplies the current field value at the specified coordinates
- Scale(int, int, int, double) - Method in class HAL.GridsAndAgents.Grid3Dint
-
multiplies the current field value at the specified coordinates
- Scale(int, int, int, double) - Method in class HAL.GridsAndAgents.Grid3Dlong
-
multiplies the current field value at the specified coordinates
- Scale(int, long) - Method in class HAL.GridsAndAgents.Grid1Dlong
-
multiplies the current field value at the specified index
- Scale0to1(double, double, double) - Static method in class HAL.Util
-
returns where the value is from min to max as a number from 0 to 1
- ScaleAll(double) - Method in class HAL.GridsAndAgents.Grid1Ddouble
-
adds specified value to all entries of the curr field
- ScaleAll(double) - Method in class HAL.GridsAndAgents.Grid1Dint
-
adds specified value to all entries of the curr field
- ScaleAll(double) - Method in class HAL.GridsAndAgents.Grid2Dlong
-
adds specified value to all entries of the curr field
- ScaleAll(double) - Method in class HAL.GridsAndAgents.Grid3Ddouble
-
multiplies all entries in the field by the value
- ScaleAll(double) - Method in class HAL.GridsAndAgents.Grid3Dint
-
multiplies all entries in the field by the value
- ScaleAll(double) - Method in class HAL.GridsAndAgents.Grid3Dlong
-
multiplies all entries in the field by the value
- ScaleAll(long) - Method in class HAL.GridsAndAgents.Grid1Dlong
-
adds specified value to all entries of the curr field
- ScaleMinToMax(double, double, double) - Static method in class HAL.Util
-
interpolates value from 0 to 1 to be between min and max
- ScoreMutant(T) - Method in interface HAL.Interfaces.GAScoreFunction
- scratch - Variable in class HAL.GridsAndAgents.PDEGrid3D
- scratch2 - Variable in class HAL.GridsAndAgents.PDEGrid3D
- serialfileReader - Variable in class HAL.Tools.FileIO
- serialfileWriter - Variable in class HAL.Tools.FileIO
- SerializableModel - Interface in HAL.Interfaces
- serialobjectReader - Variable in class HAL.Tools.FileIO
- serialobjectWriter - Variable in class HAL.Tools.FileIO
- Set(double, double) - Method in class HAL.GridsAndAgents.PDEGrid1D
- Set(double, double[], double[]) - Method in interface HAL.Tools.ODESolver.Derivative
- Set(double, double, double) - Method in class HAL.GridsAndAgents.PDEGrid2D
- Set(double, double, double, double) - Method in class HAL.GridsAndAgents.PDEGrid3D
- Set(int, boolean) - Method in class HAL.Tools.BoolSet
- Set(int, double) - Method in class HAL.GridsAndAgents.Grid1Ddouble
-
sets the current field value at the specified index
- Set(int, double) - Method in class HAL.GridsAndAgents.Grid2Ddouble
-
sets the current field value at the specified index
- Set(int, double) - Method in class HAL.GridsAndAgents.Grid3Ddouble
-
sets the current field value at the specified index
- Set(int, double) - Method in class HAL.GridsAndAgents.PDEGrid1D
-
sets the prev field value at the specified coordinates
- Set(int, double) - Method in class HAL.GridsAndAgents.PDEGrid2D
-
sets the prev field value at the specified index
- Set(int, double) - Method in class HAL.GridsAndAgents.PDEGrid3D
-
sets the current field value at the specified index
- Set(int, int) - Method in class HAL.GridsAndAgents.Grid1Dint
-
sets the current field value at the specified index
- Set(int, int) - Method in class HAL.GridsAndAgents.Grid2Dint
-
sets the current field value at the specified index
- Set(int, int) - Method in class HAL.GridsAndAgents.Grid3Dint
-
sets the current field value at the specified index
- Set(int, int) - Method in class HAL.GridsAndAgents.PopulationGridBase
- Set(int, int) - Method in class HAL.GridsAndAgents.PopulationGridLongBase
- Set(int, int, double) - Method in class HAL.GridsAndAgents.Grid2Ddouble
-
sets the current field value at the specified coordinates
- Set(int, int, double) - Method in class HAL.GridsAndAgents.PDEGrid2D
-
sets the prev field value at the specified coordinates
- Set(int, int, int) - Method in class HAL.GridsAndAgents.Grid2Dint
-
sets the current field value at the specified coordinates
- Set(int, int, int) - Method in class HAL.GridsAndAgents.PopulationGrid2D
- Set(int, int, int, double) - Method in class HAL.GridsAndAgents.Grid3Ddouble
-
sets the current field value at the specified coordinates
- Set(int, int, int, double) - Method in class HAL.GridsAndAgents.PDEGrid3D
-
sets to the current field value at the specified coordinates
- Set(int, int, int, int) - Method in class HAL.GridsAndAgents.Grid3Dint
-
sets the current field value at the specified coordinates
- Set(int, int, int, int) - Method in class HAL.GridsAndAgents.PopulationGrid3D
- Set(int, int, int, int) - Method in class HAL.GridsAndAgents.PopulationGrid3DLong
- Set(int, int, int, long) - Method in class HAL.GridsAndAgents.Grid3Dlong
-
sets the current field value at the specified coordinates
- Set(int, int, int, T) - Method in class HAL.GridsAndAgents.Grid3Dobject
-
sets the current field value at the specified coordinates
- Set(int, int, long) - Method in class HAL.GridsAndAgents.Grid2Dlong
-
sets the current field value at the specified coordinates
- Set(int, int, long) - Method in class HAL.GridsAndAgents.PopulationGrid2DLong
- Set(int, int, T) - Method in class HAL.GridsAndAgents.Grid2Dobject
-
sets the current field value at the specified coordinates
- Set(int, long) - Method in class HAL.GridsAndAgents.Grid1Dlong
-
sets the current field value at the specified index
- Set(int, long) - Method in class HAL.GridsAndAgents.Grid2Dlong
-
sets the current field value at the specified index
- Set(int, long) - Method in class HAL.GridsAndAgents.Grid3Dlong
-
sets the current field value at the specified index
- Set(int, T) - Method in class HAL.GridsAndAgents.Grid1Dobject
-
sets the current field value at the specified index
- Set(int, T) - Method in class HAL.GridsAndAgents.Grid2Dobject
-
sets the current field value at the specified index
- Set(int, T) - Method in class HAL.GridsAndAgents.Grid3Dobject
-
sets the current field value at the specified index
- Set(String) - Method in class HAL.Gui.UIBoolInput
-
sets the boolean value, true, false, t or f are all valid inputs
- Set(String) - Method in class HAL.Gui.UIComboBoxInput
-
ignore
- Set(String) - Method in class HAL.Gui.UIDoubleInput
-
ignore
- Set(String) - Method in class HAL.Gui.UIFileChooserInput
-
ignore
- Set(String) - Method in class HAL.Gui.UIIntInput
-
sets the value of the UIIntInput to the string provided
- Set(String) - Method in class HAL.Gui.UIStringInput
-
ignore
- Set(String) - Method in interface HAL.Interfaces.MenuItem
- Set(String, String) - Method in class HAL.Tools.Internal.ParamSet
-
sets the value at the specified label to the specified value
- SetActive(boolean) - Method in class HAL.Gui.UIBoolInput
- SetActive(boolean) - Method in class HAL.Gui.UIButton
- SetActive(boolean) - Method in class HAL.Gui.UIComboBoxInput
- SetActive(boolean) - Method in class HAL.Gui.UIDoubleInput
- SetActive(boolean) - Method in class HAL.Gui.UIFileChooserInput
- SetActive(boolean) - Method in class HAL.Gui.UIGrid
-
can be used to inactivate the component, preventing drawing and other overhead
- SetActive(boolean) - Method in class HAL.Gui.UIIntInput
- SetActive(boolean) - Method in class HAL.Gui.UILabel
- SetActive(boolean) - Method in class HAL.Gui.UIPlot
- SetActive(boolean) - Method in class HAL.Gui.UIStringInput
- SetActive(boolean) - Method in interface HAL.Interfaces.GuiComp
- SetAll(double) - Method in class HAL.GridsAndAgents.Grid1Ddouble
-
sets all squares in current the field to the specified value
- SetAll(double) - Method in class HAL.GridsAndAgents.Grid2Ddouble
-
sets all squares in current the field to the specified value
- SetAll(double) - Method in class HAL.GridsAndAgents.Grid3Ddouble
-
sets all squares in current the field to the specified value
- SetAll(double) - Method in class HAL.GridsAndAgents.PDEGrid1D
-
sets all squares in the delta field to the specified value
- SetAll(double) - Method in class HAL.GridsAndAgents.PDEGrid2D
-
sets all squares in the delta field to the specified value
- SetAll(double) - Method in class HAL.GridsAndAgents.PDEGrid3D
-
sets all squares in the delta field using the vals array
- SetAll(double[]) - Method in class HAL.GridsAndAgents.Grid1Ddouble
-
copies the array argument into the field
- SetAll(double[]) - Method in class HAL.GridsAndAgents.Grid2Ddouble
-
sets all squares in the field to the specified value
- SetAll(double[]) - Method in class HAL.GridsAndAgents.PDEGrid1D
-
sets all squares in the delta field using the vals array
- SetAll(double[]) - Method in class HAL.GridsAndAgents.PDEGrid2D
-
sets all squares in the delta field using the vals array
- SetAll(int) - Method in class HAL.GridsAndAgents.Grid1Dint
-
sets all squares in current the field to the specified value
- SetAll(int) - Method in class HAL.GridsAndAgents.Grid2Dint
-
sets all squares in current the field to the specified value
- SetAll(int) - Method in class HAL.GridsAndAgents.Grid3Dint
-
sets all squares in current the field to the specified value
- SetAll(int) - Method in class HAL.GridsAndAgents.PopulationGridBase
- SetAll(int[]) - Method in class HAL.GridsAndAgents.Grid1Dint
-
copies the array argument into the field
- SetAll(int[]) - Method in class HAL.GridsAndAgents.Grid2Dint
-
sets all squares in the field to the specified value
- SetAll(long) - Method in class HAL.GridsAndAgents.Grid1Dlong
-
sets all squares in current the field to the specified value
- SetAll(long) - Method in class HAL.GridsAndAgents.Grid2Dlong
-
sets all squares in current the field to the specified value
- SetAll(long) - Method in class HAL.GridsAndAgents.Grid3Dlong
-
sets all squares in current the field to the specified value
- SetAll(long) - Method in class HAL.GridsAndAgents.PopulationGridLongBase
- SetAll(long[]) - Method in class HAL.GridsAndAgents.Grid1Dlong
-
copies the array argument into the field
- SetAll(long[]) - Method in class HAL.GridsAndAgents.Grid2Dlong
- SetAll(Coords2DColor) - Method in class HAL.Gui.UIGrid
-
sets every pixel in the UIGrid using the DrawPix function
- SetAll(T) - Method in class HAL.GridsAndAgents.Grid1Dobject
-
sets all squares in current the field to the specified value
- SetAll(T) - Method in class HAL.GridsAndAgents.Grid2Dobject
-
sets all squares in the field to the specified value
- SetAll(T) - Method in class HAL.GridsAndAgents.Grid3Dobject
-
sets all squares in current the field to the specified value
- SetAll(T[]) - Method in class HAL.GridsAndAgents.Grid2Dobject
-
copies the array of values into the field
- SetAlpha(int, double) - Static method in class HAL.Util
-
returns a new color integer based on the input color but with the alpha component changed to the r argument
- SetAlpha256(int, int) - Static method in class HAL.Util
-
returns a new color integer based on the input color but with the alpha component changed to the r argument
- SetArray(int, int, double[]) - Method in interface HAL.Interfaces.Coords2DSetArray
- SetArray(int, int, int, double[]) - Method in interface HAL.Interfaces.Coords3DSetArray
- SetBirthTick(int) - Method in class HAL.GridsAndAgents.AgentBase
-
sets the agent's birthtick value, which is used for the Age calculation
- SetBit(int, int, boolean) - Static method in class HAL.Util
-
returns a version of the int v with the bit at position i set to val
- SetBit(long, int, boolean) - Static method in class HAL.Util
-
returns a version of the long v with the bit at position i set to val
- SetBlue(int, double) - Static method in class HAL.Util
-
returns a new color integer based on the input color but with the blue component changed to the r argument
- SetBlue256(int, int) - Static method in class HAL.Util
-
returns a new color integer based on the input color but with the blue component changed to the r argument
- SetChar(char, int, int, int, int) - Method in class HAL.Gui.UIGrid
-
draws a single character to the UIGrid
- SetColor(int) - Method in class HAL.Gui.UIWindow
-
sets the gui background color
- SetColor(int, int) - Method in class HAL.Gui.UIBoolInput
- SetColor(int, int) - Method in class HAL.Gui.UIButton
- SetColor(int, int) - Method in class HAL.Gui.UIComboBoxInput
- SetColor(int, int) - Method in class HAL.Gui.UIDoubleInput
- SetColor(int, int) - Method in class HAL.Gui.UIFileChooserInput
- SetColor(int, int) - Method in class HAL.Gui.UIIntInput
- SetColor(int, int) - Method in class HAL.Gui.UILabel
- SetColor(int, int) - Method in class HAL.Gui.UIStringInput
- SetColor(Color, Color) - Method in class HAL.Gui.UIBoolInput
-
sets the foreground and background of the UIBoolInput
- SetColor(Color, Color) - Method in class HAL.Gui.UIButton
-
sets the foreground and background of the UIButton
- SetColor(Color, Color) - Method in class HAL.Gui.UIComboBoxInput
-
sets the foreground and background of the UIComboBoxInput
- SetColor(Color, Color) - Method in class HAL.Gui.UIDoubleInput
-
sets the foreground and background of the UIDoubleInput
- SetColor(Color, Color) - Method in class HAL.Gui.UIFileChooserInput
-
sets the foreground and background of the UIFileChooserInput
- SetColor(Color, Color) - Method in class HAL.Gui.UIIntInput
-
sets the foreground and background of the UIIntInput
- SetColor(Color, Color) - Method in class HAL.Gui.UILabel
-
sets the foreground and background of the UILabel
- SetColor(Color, Color) - Method in class HAL.Gui.UIStringInput
-
sets the foreground and background of the UIStringInput
- SetDims(double, double, double, double) - Method in class HAL.Gui.UIPlot
- SetFile(File) - Method in class HAL.Gui.UIFileChooserInput
-
sets the selected file
- SetGreen(int, double) - Static method in class HAL.Util
-
returns a new color integer based on the input color but with the green component changed to the r argument
- SetGreen256(int, int) - Static method in class HAL.Util
-
returns a new color integer based on the input color but with the green component changed to the r argument
- SetGui(String, String) - Method in class HAL.Tools.Internal.ParamSet
-
sets the gui component with the provided label to val
- SetGuiAll(String[]) - Method in class HAL.Tools.Internal.ParamSet
-
set all gui values with the vals array provided
- SetLabels(String[]) - Method in class HAL.Tools.Internal.ParamSet
-
sets all labels with the labels array provided
- SetLables(String[]) - Method in class HAL.Gui.UIWindow
- SetNandPInt(int, double) - Method in class HAL.Tools.Internal.Binomial
- SetNandPLong(long, double) - Method in class HAL.Tools.Internal.Binomial
- SetNonNegative() - Method in class HAL.GridsAndAgents.PDEGrid1D
-
ensures that all values will be non-negative on the next timestep, call before Update
- SetNonNegative() - Method in class HAL.GridsAndAgents.PDEGrid2D
-
ensures that all values will be non-negative on the next timestep, call before Update
- SetNonNegative() - Method in class HAL.GridsAndAgents.PDEGrid3D
-
ensures that all values will be non-negative on the next timestep, call before Update
- SetParam(String, String) - Method in class HAL.Gui.UIWindow
- SetParamChangeAction(ParamSetChangeAction) - Method in class HAL.Gui.UIWindow
- SetParamChangeAction(ParamSetChangeAction) - Method in class HAL.Tools.Internal.ParamSet
- SetParamValues(String[]) - Method in class HAL.Gui.UIWindow
- SetPix(int, int) - Method in class HAL.Gui.OpenGL2DWindow
-
duplicates UIGrid functionality, draws a rectangle large enough to fill one lattice position
- SetPix(int, int) - Method in class HAL.Gui.UIGrid
-
sets an individual pixel on the GridWindow.
- SetPix(int, int) - Method in interface HAL.Interfaces.Coords2DColor
- SetPix(int, int, int) - Method in class HAL.Gui.OpenGL2DWindow
-
duplicates UIGrid functionality, draws a rectangle large enough to fill one lattice position
- SetPix(int, int, int) - Method in class HAL.Gui.UIGrid
-
sets an individual pixel on the GridWindow.
- SetPix(int, int, ColorIntGenerator) - Method in class HAL.Gui.UIGrid
-
same functionality as SetPix with a color argument, but instead takes a ColorIntGenerator function (a function that takes no arguments and returns an int).
- SetPix(int, ColorIntGenerator) - Method in class HAL.Gui.UIGrid
-
same functionality as SetPix with a color argument, but instead takes a ColorIntGenerator function (a function that takes no arguments and returns an int).
- SetPixRect(int, int, int, int, int) - Method in class HAL.Gui.UIGrid
- SetPixXY(int, int, int) - Method in class HAL.Gui.OpenGL3DWindow
- SetPixXZ(int, int, int) - Method in class HAL.Gui.OpenGL3DWindow
- SetPixYZ(int, int, int) - Method in class HAL.Gui.OpenGL3DWindow
- SetPop(long) - Method in class HAL.Tools.PhylogenyTracker.Genome
-
sets the active population size for this genome to a specific value.
- SetRect(int, int, int, int, Coords2DColor) - Method in class HAL.Gui.UIGrid
-
sets a rectangular section of the UIGrid using the ColorFn argument
- SetRed(int, double) - Static method in class HAL.Util
-
returns a new color integer based on the input color but with the red component changed to the r argument
- SetRed256(int, int) - Static method in class HAL.Util
-
returns a new color integer based on the input color but with the red component changed to the r argument
- SetSafe(int, boolean) - Method in class HAL.Tools.BoolSet
- SetString(String, int, int, int, int) - Method in class HAL.Gui.UIGrid
-
draws a string to the UIGrid on a single line.
- SetString(String, int, int, int, int, int) - Method in class HAL.Gui.UIGrid
- SetString(String, int, int, int, int, int, int) - Method in class HAL.Gui.UIGrid
- SetText(String) - Method in class HAL.Gui.UIButton
- SetText(String) - Method in class HAL.Gui.UILabel
- Setup(int) - Method in class HAL.Tools.MultinomialCalc
- Setup(long) - Method in class HAL.Tools.MultinomialCalcLong
- SetupConstructors() - Method in interface HAL.Interfaces.SerializableModel
- SetupSparseIndices() - Method in class HAL.GridsAndAgents.PopulationGridBase
- SetupSparseIndices() - Method in class HAL.GridsAndAgents.PopulationGridLongBase
- SetVals(String[]) - Method in class HAL.Tools.Internal.ParamSet
-
sets all values with the vals array provided
- SetValsAndLabels(String[], String[]) - Method in class HAL.Gui.UIWindow
- SetValsAndLabels(String[], String[]) - Method in class HAL.Tools.Internal.ParamSet
-
sets both the vals and labels with the arrays provided
- SetVars(double[]) - Method in interface HAL.Tools.Modularity.VarSet
- Shuffle(double[]) - Method in class HAL.Rand
- Shuffle(double[], int) - Method in class HAL.Rand
- Shuffle(double[], int, int) - Method in class HAL.Rand
-
Shuffles an array of doubles
- Shuffle(int[]) - Method in class HAL.Rand
- Shuffle(int[], int) - Method in class HAL.Rand
- Shuffle(int[], int, int) - Method in class HAL.Rand
-
Shuffles an array of integers
- Shuffle(Object[]) - Method in class HAL.Rand
- Shuffle(Object[], int, int) - Method in class HAL.Rand
-
Shuffles an array of objects
- ShuffleAgents(Rand) - Method in class HAL.GridsAndAgents.AgentGrid0D
-
shuffles the agent list to randomize iteration do not call this while in the middle of iteration
- ShuffleAgents(Rand) - Method in class HAL.GridsAndAgents.AgentGrid1D
-
shuffles the agent list to randomize iteration.
- ShuffleAgents(Rand) - Method in class HAL.GridsAndAgents.AgentGrid2D
-
shuffles the agent list to randomize iteration.
- ShuffleAgents(Rand) - Method in class HAL.GridsAndAgents.AgentGrid3D
-
shuffles the agent list to randomize iteration.
- ShuffleAgents(Rand) - Method in class HAL.GridsAndAgents.AgentList
-
Shuffles the agentlist order (Don't run during agent iteration)
- Sigmoid(double, double) - Static method in class HAL.Util
-
transforms val with a sigmoid curve with a minCap of 0, a maxCap of 1, and an inflectionX value of 0
- Sigmoid(double, double, double, double, double) - Static method in class HAL.Util
-
transforms val with a sigmoid curve with the given properties
- Sort(IsEntry1Before2, SwapEntries, int) - Static method in class HAL.Util
- Sortable - Interface in HAL.Interfaces
-
allows for the QuickSort function to be used to sort the object
- SphericalAgent2D<A extends SphericalAgent2D,G extends AgentGrid2D<A>> - Class in HAL.GridsAndAgents
-
Spherical cow model of 2D cells
- SphericalAgent2D() - Constructor for class HAL.GridsAndAgents.SphericalAgent2D
- SphericalAgent3D<A extends SphericalAgent3D,G extends AgentGrid3D<A>> - Class in HAL.GridsAndAgents
-
Spherical cow model of 3D cells
- SphericalAgent3D() - Constructor for class HAL.GridsAndAgents.SphericalAgent3D
- split() - Method in class HAL.Tools.Internal.SplittableRN
-
Constructs and returns a new SplittableRandom instance that shares no mutable state with this instance.
- SplittableRN - Class in HAL.Tools.Internal
-
A generator of uniform pseudorandom values applicable for use in (among other contexts) isolated parallel computations that may generate subtasks.
- SplittableRN() - Constructor for class HAL.Tools.Internal.SplittableRN
-
Creates a new SplittableRandom instance that is likely to generate sequences of values that are statistically independent of those of any other instances in the current program; and may, and typically does, vary across program invocations.
- SplittableRN(long) - Constructor for class HAL.Tools.Internal.SplittableRN
-
Creates a new SplittableRandom instance using the specified initial seed.
- Square(double, double, double, int) - Method in class HAL.Gui.OpenGL2DWindow
- Step() - Method in class HAL.Tools.MultiWellExperiment.MultiWellExperiment
-
runs a single timestep
- Step(T, int) - Method in interface HAL.Tools.MultiWellExperiment.StepWell
- StepMultiThread() - Method in class HAL.Tools.MultiWellExperiment.MultiWellExperiment
-
runs a single multithreaded step
- StepWell<T> - Interface in HAL.Tools.MultiWellExperiment
- SubsetIndices(int[], int, IndexBool) - Static method in class HAL.Util
-
subsets a set of indices such that all indices evaluate to true under the EvalFun
- SumForces(double, AgentGrid2D<T>, OverlapForceResponse2D<T>) - Method in class HAL.GridsAndAgents.SphericalAgent2D
- SumForces(double, AgentGrid2D<T>, OverlapForceResponse2D<T>, Rand) - Method in class HAL.GridsAndAgents.SphericalAgent2D
-
similar to the SumForces function above, but it can be used with other AgentGrids
- SumForces(double, AgentGrid3D<T>, OverlapForceResponse3D<T>) - Method in class HAL.GridsAndAgents.SphericalAgent3D
-
similar to the SumForces function above, but it can be used with other AgentGrids
- SumForces(double, OverlapForceResponse2D<A>) - Method in class HAL.GridsAndAgents.SphericalAgent2D
-
The interactionRad argument is a double that specifies how far apart to check for other agent centers to interact with, and should be set to the maximum distance apart that two interacting agent centers can be.
- SumForces(double, OverlapForceResponse2D<A>, Rand) - Method in class HAL.GridsAndAgents.SphericalAgent2D
- SumForces(double, OverlapForceResponse3D<A>) - Method in class HAL.GridsAndAgents.SphericalAgent3D
-
The interactionRad argument is a double that specifies how far apart to check for other agent centers to interact with, and should be set to the maximum distance apart that two interacting agent centers can be.
- SumForces(ArrayList<T>, ArrayList<double[]>, OverlapForceResponse2D<T>) - Method in class HAL.GridsAndAgents.SphericalAgent2D
- SumForces(ArrayList<T>, ArrayList<double[]>, OverlapForceResponse3D<T>) - Method in class HAL.GridsAndAgents.SphericalAgent3D
- SumTo1(double[]) - Static method in class HAL.Util
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sets the values in the array such that they sum to 1
- SumTo1(double[], int, int) - Static method in class HAL.Util
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sets the values in the array such that they sum to 1, using only the numbers between start and end
- Swap(int, int) - Method in interface HAL.Interfaces.Sortable
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should swap the objects at these indices so that they switch places in their data structure
- Swap(int, int) - Method in interface HAL.Interfaces.SwapEntries
- SwapEntries - Interface in HAL.Interfaces
- SwapPosition(AgentSQ1Dunstackable<T>) - Method in class HAL.GridsAndAgents.AgentSQ1Dunstackable
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swaps the positions of two agents.
- SwapPosition(AgentSQ2Dunstackable<T>) - Method in class HAL.GridsAndAgents.AgentSQ2Dunstackable
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swaps the positions of two agents.
- SwapPosition(AgentSQ3Dunstackable<T>) - Method in class HAL.GridsAndAgents.AgentSQ3Dunstackable
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swaps the positions of two agents.
- SweepRun<T> - Class in HAL.Tools.Internal
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Created by rafael on 4/15/17.
- SweepRun(ParallelFunction, int) - Constructor for class HAL.Tools.Internal.SweepRun
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