I-Index

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I

I(double, double) - Method in interface HAL.Interfaces.Grid2D: gets the index of the square that contains the specified coordinates
I(double, double, double) - Method in interface HAL.Interfaces.Grid3D: gets the index of the square that contains the specified coordinates
I(int, int) - Method in interface HAL.Interfaces.Grid2D: gets the index of the square at the specified coordinates
I(int, int, int) - Method in interface HAL.Interfaces.Grid3D: gets the index of the voxel at the specified coordinates
In(double) - Method in interface HAL.Interfaces.Grid1D: returns whether the specified coordinates are inside the typeGrid bounds
In(double, double) - Method in interface HAL.Interfaces.Grid2D: returns whether the specified coordinates are inside the typeGrid bounds
In(double, double, double) - Method in interface HAL.Interfaces.Grid3D: returns whether the specified coordinates are inside the typeGrid bounds
In(int) - Method in interface HAL.Interfaces.Grid1D: returns whether the specified coordinates are inside the typeGrid bounds
In(int, int) - Method in interface HAL.Interfaces.Grid2D: returns whether the specified coordinates are inside the typeGrid bounds
In(int, int, int) - Method in interface HAL.Interfaces.Grid3D: returns whether the specified coordinates are inside the typeGrid bounds
IncPop() - Method in class HAL.Tools.PhylogenyTracker.Genome: adds an individual to the genome population, should be called as part of the initialization of all agents that share this genome.
IncTick() - Method in class HAL.GridsAndAgents.AgentGrid0D
IncTick() - Method in class HAL.GridsAndAgents.AgentGrid1D: increments the internal grid tick counter by 1, used with the Age() and BirthTick() functions to get age information about the agents on an AgentGrid.
IncTick() - Method in class HAL.GridsAndAgents.AgentGrid2D: increments the internal grid tick counter by 1, used with the Age() and BirthTick() functions to get age information about the agents on an AgentGrid.
IncTick() - Method in class HAL.GridsAndAgents.AgentGrid3D: increments the internal grid tick counter by 1, used with the Age() and BirthTick() functions to get age information about the agents on an AgentGrid.
IndexAction - Interface in HAL.Interfaces
IndexBool - Interface in HAL.Interfaces
IndexCoords2DAction - Interface in HAL.Interfaces
IndexCoords2DBool - Interface in HAL.Interfaces
IndexCoords2DDouble - Interface in HAL.Interfaces
IndexCoords3DAction - Interface in HAL.Interfaces
IndexCoords3DBool - Interface in HAL.Interfaces
IndexIntAction - Interface in HAL.Interfaces
IndexIntToAction - Interface in HAL.Interfaces
IndexLongAction - Interface in HAL.Interfaces
InDim(double, double) - Static method in class HAL.Util: returns whether the input value is between 0 and the dimension value
InDim(int, int) - Static method in class HAL.Util: returns whether the input value is between 0 and the dimension value
InfiniteLinesIntersection2D(double, double, double, double, double, double, double, double, double[]) - Static method in class HAL.Util: gets the point at which the line from (x1,y1) to (x2,y2) intersects with the line from (x3,y3) and (x4,y4) and puts the coordinates in retCoords.
Init(double) - Method in class HAL.GridsAndAgents.SphericalAgent3D
InList(T) - Method in class HAL.GridsAndAgents.AgentList: returns whether a given agent is already in the AgentList
Int(int) - Method in interface HAL.Interfaces.RNG
Int(int) - Method in class HAL.Rand: returns a random integer from 0 up to (not including) bound
Int(int) - Method in class HAL.Tools.Internal.SplittableRN
IntDoubleToVoid - Interface in HAL.Interfaces
InteractiveModel - Class in HAL.Tools.InteractiveModel
InteractiveModel(TreatableTumor, int, int, int, int, int, int, int, int, boolean, boolean) - Constructor for class HAL.Tools.InteractiveModel.InteractiveModel
InteractiveStep(double[], int) - Method in interface HAL.Tools.InteractiveModel.TreatableTumor
Interpolate(double, double, double) - Static method in class HAL.Util: interpolates value from 0 to 1 to be between min and max
Interpolate2D(double, double, double, double, double, double) - Static method in class HAL.Util: interpolates value from 0 to 1 to be between min and max
Interpolate2DNoBound(double, double, double, double, double, double) - Static method in class HAL.Util
InterpolateLinear(double, double, double, double, double) - Static method in class HAL.Util
InterpolateNoBound(double, double, double) - Static method in class HAL.Util
ints() - Method in class HAL.Tools.Internal.SplittableRN: Returns an effectively unlimited stream of pseudorandom int values from this generator and/or one split from it.
ints(int, int) - Method in class HAL.Tools.Internal.SplittableRN: Returns an effectively unlimited stream of pseudorandom int values from this generator and/or one split from it; each value conforms to the given origin (inclusive) and bound (exclusive).
ints(long) - Method in class HAL.Tools.Internal.SplittableRN: Returns a stream producing the given streamSize number of pseudorandom int values from this generator and/or one split from it.
ints(long, int, int) - Method in class HAL.Tools.Internal.SplittableRN: Returns a stream producing the given streamSize number of pseudorandom int values from this generator and/or one split from it; each value conforms to the given origin (inclusive) and bound (exclusive).
IntToBool - Interface in HAL.Interfaces
IntToDouble - Interface in HAL.Interfaces
IntToInt - Interface in HAL.Interfaces
InvalidateHistory(int) - Method in class HAL.Tools.InteractiveModel.InteractiveModel
InWrap(double) - Method in interface HAL.Interfaces.Grid1D: returns whether the specified coordinates are inside the Grid bounds with wraparound
InWrap(double, double, double) - Method in interface HAL.Interfaces.Grid3D: returns whether the specified coordinates are inside the Grid bounds with wraparound
InWrap(int) - Method in interface HAL.Interfaces.Grid1D: returns whether the specified coordinates are inside the Grid bounds with wraparound
InWrap(int, int) - Method in interface HAL.Interfaces.Grid2D: returns whether the specified coordinates are inside the Grid bounds with wraparound
InWrap(int, int, int) - Method in interface HAL.Interfaces.Grid3D: returns whether the specified coordinates are inside the Grid bounds with wraparound
IsActive() - Method in class HAL.Gui.OpenGL2DWindow: returns whether the Gui is active (whether it exists)
IsActive() - Method in class HAL.Gui.OpenGL3DWindow: returns whether the Gui is active (whether it exists)
IsActive() - Method in class HAL.Gui.UIBoolInput
IsActive() - Method in class HAL.Gui.UIButton
IsActive() - Method in class HAL.Gui.UIComboBoxInput
IsActive() - Method in class HAL.Gui.UIDoubleInput
IsActive() - Method in class HAL.Gui.UIFileChooserInput
IsActive() - Method in class HAL.Gui.UIGrid: returns whether the UIGrid is active (whether it exists)
IsActive() - Method in class HAL.Gui.UIIntInput
IsActive() - Method in class HAL.Gui.UILabel
IsActive() - Method in class HAL.Gui.UIPlot
IsActive() - Method in class HAL.Gui.UIStringInput
IsActive() - Method in class HAL.Gui.UIWindow
IsActive() - Method in interface HAL.Interfaces.GuiComp
IsAlive() - Method in class HAL.GridsAndAgents.AgentBase: Returns whether the agent is alive or has been disposed
IsClosed() - Method in class HAL.Gui.GridWindow
IsClosed() - Method in class HAL.Gui.OpenGL2DWindow: returns true if the close button has been clicked in the Gui
IsClosed() - Method in class HAL.Gui.OpenGL3DWindow: returns true if the close button has been clicked in the Gui
IsClosed() - Method in class HAL.Gui.PlotWindow
IsClosed() - Method in class HAL.Gui.UIWindow
IsClosed() - Method in class HAL.Tools.FileIO: returns whether the FileIO object has closed the file already
IsEntry1Before2 - Interface in HAL.Interfaces
IsKeyDown(char) - Method in class HAL.Gui.GridWindow: returns whether the given key is currently pressed
IsKeyDown(char) - Method in class HAL.Gui.UIWindow
IsKeyDown(int) - Method in class HAL.Gui.GridWindow: returns whether the given key is currently pressed
IsKeyDown(int) - Method in class HAL.Gui.UIWindow
IsMethodOverridden(Class<O>, String) - Static method in class HAL.Util
IsMethodOverridden(Class, Class, String) - Static method in class HAL.Util
IsPath(String) - Static method in class HAL.Util
IsPressed(char) - Method in class HAL.Tools.Internal.KeyRecorder
IsPressed(int) - Method in class HAL.Tools.Internal.KeyRecorder
Isq() - Method in class HAL.GridsAndAgents.AgentBaseSpatial: returns the index of the square that the agent is currently on
Isq() - Method in class HAL.GridsAndAgents.AgentSQ1Dunstackable
Isq() - Method in class HAL.GridsAndAgents.AgentSQ2Dunstackable: Gets the index of the square that the agent occupies
IsRunning() - Method in class HAL.Gui.UIWindow
IsWrapX() - Method in class HAL.GridsAndAgents.AgentGrid1D
IsWrapX() - Method in class HAL.GridsAndAgents.AgentGrid2D
IsWrapX() - Method in class HAL.GridsAndAgents.AgentGrid3D
IsWrapX() - Method in class HAL.GridsAndAgents.Grid1Ddouble
IsWrapX() - Method in class HAL.GridsAndAgents.Grid1Dint
IsWrapX() - Method in class HAL.GridsAndAgents.Grid1Dlong
IsWrapX() - Method in class HAL.GridsAndAgents.Grid1Dobject
IsWrapX() - Method in class HAL.GridsAndAgents.Grid2Ddouble
IsWrapX() - Method in class HAL.GridsAndAgents.Grid2Dint
IsWrapX() - Method in class HAL.GridsAndAgents.Grid2Dlong
IsWrapX() - Method in class HAL.GridsAndAgents.Grid2Dobject
IsWrapX() - Method in class HAL.GridsAndAgents.Grid3Ddouble
IsWrapX() - Method in class HAL.GridsAndAgents.Grid3Dint
IsWrapX() - Method in class HAL.GridsAndAgents.Grid3Dlong
IsWrapX() - Method in class HAL.GridsAndAgents.Grid3Dobject
IsWrapX() - Method in class HAL.GridsAndAgents.PDEGrid1D
IsWrapX() - Method in class HAL.GridsAndAgents.PDEGrid2D
IsWrapX() - Method in class HAL.GridsAndAgents.PDEGrid3D
IsWrapX() - Method in class HAL.GridsAndAgents.PopulationGrid1D
IsWrapX() - Method in class HAL.GridsAndAgents.PopulationGrid1DLong
IsWrapX() - Method in class HAL.GridsAndAgents.PopulationGrid2D
IsWrapX() - Method in class HAL.GridsAndAgents.PopulationGrid2DLong
IsWrapX() - Method in class HAL.GridsAndAgents.PopulationGrid3D
IsWrapX() - Method in class HAL.GridsAndAgents.PopulationGrid3DLong
IsWrapX() - Method in class HAL.Gui.OpenGL2DWindow
IsWrapX() - Method in class HAL.Gui.OpenGL3DWindow
IsWrapX() - Method in class HAL.Gui.UIGrid
IsWrapX() - Method in interface HAL.Interfaces.Grid1D
IsWrapX() - Method in interface HAL.Interfaces.Grid2D
IsWrapX() - Method in interface HAL.Interfaces.Grid3D
IsWrapY() - Method in class HAL.GridsAndAgents.AgentGrid2D
IsWrapY() - Method in class HAL.GridsAndAgents.AgentGrid3D
IsWrapY() - Method in class HAL.GridsAndAgents.Grid2Ddouble
IsWrapY() - Method in class HAL.GridsAndAgents.Grid2Dint
IsWrapY() - Method in class HAL.GridsAndAgents.Grid2Dlong
IsWrapY() - Method in class HAL.GridsAndAgents.Grid2Dobject
IsWrapY() - Method in class HAL.GridsAndAgents.Grid3Ddouble
IsWrapY() - Method in class HAL.GridsAndAgents.Grid3Dint
IsWrapY() - Method in class HAL.GridsAndAgents.Grid3Dlong
IsWrapY() - Method in class HAL.GridsAndAgents.Grid3Dobject
IsWrapY() - Method in class HAL.GridsAndAgents.PDEGrid2D
IsWrapY() - Method in class HAL.GridsAndAgents.PDEGrid3D
IsWrapY() - Method in class HAL.GridsAndAgents.PopulationGrid2D
IsWrapY() - Method in class HAL.GridsAndAgents.PopulationGrid2DLong
IsWrapY() - Method in class HAL.GridsAndAgents.PopulationGrid3D
IsWrapY() - Method in class HAL.GridsAndAgents.PopulationGrid3DLong
IsWrapY() - Method in class HAL.Gui.OpenGL2DWindow
IsWrapY() - Method in class HAL.Gui.OpenGL3DWindow
IsWrapY() - Method in class HAL.Gui.UIGrid
IsWrapY() - Method in interface HAL.Interfaces.Grid2D
IsWrapY() - Method in interface HAL.Interfaces.Grid3D
IsWrapZ() - Method in class HAL.GridsAndAgents.AgentGrid3D
IsWrapZ() - Method in class HAL.GridsAndAgents.Grid3Ddouble
IsWrapZ() - Method in class HAL.GridsAndAgents.Grid3Dint
IsWrapZ() - Method in class HAL.GridsAndAgents.Grid3Dlong
IsWrapZ() - Method in class HAL.GridsAndAgents.Grid3Dobject
IsWrapZ() - Method in class HAL.GridsAndAgents.PDEGrid3D
IsWrapZ() - Method in class HAL.GridsAndAgents.PopulationGrid3D
IsWrapZ() - Method in class HAL.GridsAndAgents.PopulationGrid3DLong
IsWrapZ() - Method in class HAL.Gui.OpenGL3DWindow
IsWrapZ() - Method in interface HAL.Interfaces.Grid3D
Iter(String) - Method in class HAL.Tools.Modularity.ModuleSetManager: use with foreach loop to iterate over modules that override a given method.
IterAgents(int) - Method in class HAL.GridsAndAgents.AgentGrid1D: iterates over all agents at position
IterAgents(int) - Method in class HAL.GridsAndAgents.AgentGrid2D: iterates over all agents at position
IterAgents(int) - Method in class HAL.GridsAndAgents.AgentGrid3D: iterates over all agents at position
IterAgents(int, int) - Method in class HAL.GridsAndAgents.AgentGrid2D: iterates over all agents at position
IterAgents(int, int, int) - Method in class HAL.GridsAndAgents.AgentGrid3D: iterates over all agents at position
IterAgentsHood(int[], int) - Method in class HAL.GridsAndAgents.AgentGrid1D: iterates over all agents found in a neighborhood after mapping
IterAgentsHood(int[], int) - Method in class HAL.GridsAndAgents.AgentGrid2D: iterates over all agents found in a neighborhood after mapping
IterAgentsHood(int[], int) - Method in class HAL.GridsAndAgents.AgentGrid3D: iterates over all agents found in a neighborhood after mapping
IterAgentsHood(int[], int, int) - Method in class HAL.GridsAndAgents.AgentGrid2D: iterates over all agents found in a neighborhood after mapping
IterAgentsHood(int[], int, int, int) - Method in class HAL.GridsAndAgents.AgentGrid3D: iterates over all agents found in a neighborhood after mapping
IterAgentsHoodMapped(int[], int) - Method in class HAL.GridsAndAgents.AgentGrid1D: iterates over all agents found in an already mapped neighborhood
IterAgentsHoodMapped(int[], int) - Method in class HAL.GridsAndAgents.AgentGrid2D: iterates over all agents found in an already mapped neighborhood
IterAgentsHoodMapped(int[], int) - Method in class HAL.GridsAndAgents.AgentGrid3D: iterates over all agents found in an already mapped neighborhood
IterAgentsRad(double, double) - Method in class HAL.GridsAndAgents.AgentGrid1D: iterates over all agents within radius
IterAgentsRad(double, double, double) - Method in class HAL.GridsAndAgents.AgentGrid2D: iterates over all agents within radius
IterAgentsRad(double, double, double, double) - Method in class HAL.GridsAndAgents.AgentGrid3D: iterates over all agents within radius
IterAgentsRadApprox(double, double) - Method in class HAL.GridsAndAgents.AgentGrid1D: iterates over all agents within radius, will include some over rad as well, use a second distance check to filter these
IterAgentsRadApprox(double, double, double, double) - Method in class HAL.GridsAndAgents.AgentGrid3D: iterates over all agents within radius, will include some over rad as well, use a second distance check to filter these
IterAgentsRect(int, int) - Method in class HAL.GridsAndAgents.AgentGrid1D: iterates over all agents in the rectangle defined by (x,y) as the lower left corner, and (x+width,y+height) as the top right corner.
IterAgentsRect(int, int, int, int) - Method in class HAL.GridsAndAgents.AgentGrid2D: iterates over all agents in the rectangle defined by (x,y) as the lower left corner, and (x+width,y+height) as the top right corner.
IterAgentsRect(int, int, int, int, int, int) - Method in class HAL.GridsAndAgents.AgentGrid3D: iterates over all agents in the rectangle defined by (x,y) as the lower left corner, and (x+width,y+height) as the top right corner.
IterAgentsSafe(int) - Method in class HAL.GridsAndAgents.AgentGrid1D: Same as IterAgents above, but will apply wraparound if x,y fall outside the grid dimensions.
IterAgentsSafe(int, int) - Method in class HAL.GridsAndAgents.AgentGrid2D: Same as IterAgents above, but will apply wraparound if x,y fall outside the grid dimensions.
IterAgentsSafe(int, int, int) - Method in class HAL.GridsAndAgents.AgentGrid3D: Same as IterAgents above, but will apply wraparound if x,y fall outside the grid dimensions.
iterator() - Method in class HAL.GridsAndAgents.AgentGrid0D
iterator() - Method in class HAL.GridsAndAgents.AgentGrid1D
iterator() - Method in class HAL.GridsAndAgents.AgentGrid2D
iterator() - Method in class HAL.GridsAndAgents.AgentGrid3D
iterator() - Method in class HAL.GridsAndAgents.AgentList
iterator() - Method in class HAL.GridsAndAgents.PopulationGridBase
iterator() - Method in class HAL.GridsAndAgents.PopulationGridLongBase
iterator() - Method in class HAL.Tools.PhylogenyTracker.Genome
ItoX(int) - Method in interface HAL.Interfaces.Grid2D: gets the xDim component of the square at the specified index
ItoX(int) - Method in interface HAL.Interfaces.Grid3D: gets the xDim component of the voxel at the specified index
ItoY(int) - Method in interface HAL.Interfaces.Grid2D: gets the yDim component of the square at the specified index
ItoY(int) - Method in interface HAL.Interfaces.Grid3D: gets the yDim component of the voxel at the specified index
ItoZ(int) - Method in interface HAL.Interfaces.Grid3D: gets the z component of the voxel at the specified index

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