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D

DecPop() - Method in class HAL.Tools.PhylogenyTracker.Genome

removes an individual from the genome population, should be called as part of the disposal of all agents that share this genome.

DefaultInit(double) - Method in class HAL.GridsAndAgents.SphericalAgent2D

a default initialization function that sets the radius based on the argument, and the x and y velocities to 0

Delta1D(double[], double, int, int, boolean, Coords1DDouble) - Static method in class HAL.Tools.Internal.PDEequations

Delta1D(int[], int, int, int, boolean, Coords1DInt) - Static method in class HAL.Tools.Internal.PopulationGridPDEequations

Delta1DADI(double[], double, int, int, boolean, Coords1DDouble) - Static method in class HAL.Tools.Internal.ADIequations

deltas - Variable in class HAL.GridsAndAgents.PDEGrid3D

DeltaX2D(double[], double, int, int, int, int, boolean, Coords2DDouble) - Static method in class HAL.Tools.Internal.PDEequations

DeltaX2D(int[], int, int, int, int, int, boolean, Coords2DInt) - Static method in class HAL.Tools.Internal.PopulationGridPDEequations

DeltaX2DADI(double[], double, int, int, int, int, boolean, Coords2DDouble) - Static method in class HAL.Tools.Internal.ADIequations

DeltaX3D(double[], double, int, int, int, int, int, int, boolean, Coords3DDouble) - Static method in class HAL.Tools.Internal.PDEequations

DeltaX3D(int[], int, int, int, int, int, int, int, boolean, Coords3DInt) - Static method in class HAL.Tools.Internal.PopulationGridPDEequations

DeltaX3DADI(double[], double, int, int, int, int, int, int, boolean, Coords3DDouble) - Static method in class HAL.Tools.Internal.ADIequations

DeltaY2D(double[], double, int, int, int, int, boolean, Coords2DDouble) - Static method in class HAL.Tools.Internal.PDEequations

DeltaY2D(int[], int, int, int, int, int, boolean, Coords2DInt) - Static method in class HAL.Tools.Internal.PopulationGridPDEequations

DeltaY2DADI(double[], double, int, int, int, int, boolean, Coords2DDouble) - Static method in class HAL.Tools.Internal.ADIequations

DeltaY3D(double[], double, int, int, int, int, int, int, boolean, Coords3DDouble) - Static method in class HAL.Tools.Internal.PDEequations

DeltaY3D(int[], int, int, int, int, int, int, int, boolean, Coords3DInt) - Static method in class HAL.Tools.Internal.PopulationGridPDEequations

DeltaY3DADI(double[], double, int, int, int, int, int, int, boolean, Coords3DDouble) - Static method in class HAL.Tools.Internal.ADIequations

DeltaZ3D(double[], double, int, int, int, int, int, int, boolean, Coords3DDouble) - Static method in class HAL.Tools.Internal.PDEequations

DeltaZ3D(int[], int, int, int, int, int, int, int, boolean, Coords3DInt) - Static method in class HAL.Tools.Internal.PopulationGridPDEequations

DeltaZ3DADI(double[], double, int, int, int, int, int, int, boolean, Coords3DDouble) - Static method in class HAL.Tools.Internal.ADIequations

Derivative - Interface in HAL.Tools.ODESolver

Diffusion(double) - Method in class HAL.GridsAndAgents.PDEGrid1D

runs diffusion on the current field, adding the deltas to the delta field.

Diffusion(double) - Method in class HAL.GridsAndAgents.PDEGrid2D

runs diffusion on the current field, adding the deltas to the delta field.

Diffusion(double) - Method in class HAL.GridsAndAgents.PDEGrid3D

/** runs diffusion on the current field, adding the deltas to the delta field.

Diffusion(double[]) - Method in class HAL.GridsAndAgents.PDEGrid1D

runs diffusion with discontinuous diffusion rates

Diffusion(double[], double[]) - Method in class HAL.GridsAndAgents.PDEGrid2D

runs diffusion with discontinuous diffusion rates

Diffusion(double[], double[], double[]) - Method in class HAL.GridsAndAgents.PDEGrid3D

runs diffusion with discontinuous diffusion rates

Diffusion(double[], double[], double[], Coords3DDouble, Coords3DDouble, Coords3DDouble, Coords3DDouble) - Method in class HAL.GridsAndAgents.PDEGrid3D

runs diffusion with discontinuous diffusion rates

Diffusion(double[], double[], Coords2DDouble, Coords2DDouble, Coords2DDouble) - Method in class HAL.GridsAndAgents.PDEGrid2D

runs diffusion with discontinuous diffusion rates

Diffusion(double[], Coords1DDouble, Coords1DDouble) - Method in class HAL.GridsAndAgents.PDEGrid1D

runs diffusion with discontinuous diffusion rates

Diffusion(double, double) - Method in class HAL.GridsAndAgents.PDEGrid1D

has the same effect as the above diffusion function without the boundary value argument, except rather than assuming zero flux, the boundary condition is set to either the boundaryValue, or wrap around

Diffusion(double, double) - Method in class HAL.GridsAndAgents.PDEGrid2D

has the same effect as the above diffusion function without the boundary value argument, except rather than assuming zero flux, the boundary condition is set to either the boundaryValue, or wrap around

Diffusion(double, double) - Method in class HAL.GridsAndAgents.PDEGrid3D

has the same effect as the above diffusion function without the boundary value argument, except rather than assuming zero flux, the boundary condition is set to either the boundaryValue, or wrap around

Diffusion(double, Coords1DDouble) - Method in class HAL.GridsAndAgents.PDEGrid1D

has the same effect as the above diffusion function with a boundary condition function, which will be evaluated with the out of bounds coordinates as arguments whenever a boundary value is needed, and should return the boundary value

Diffusion(double, Coords2DDouble) - Method in class HAL.GridsAndAgents.PDEGrid2D

has the same effect as the above diffusion function with a boundary condition function, which will be evaluated with the out of bounds coordinates as arguments whenever a boundary value is needed, and should return the boundary value

Diffusion(double, Coords3DDouble) - Method in class HAL.GridsAndAgents.PDEGrid3D

has the same effect as the above diffusion function with a boundary condition function, which will be evaluated with the out of bounds coordinates as arguments whenever a boundary value is needed, and should return the boundary value

Diffusion(double, MultinomialCalc) - Method in class HAL.GridsAndAgents.PopulationGrid1D

Diffusion(double, MultinomialCalc) - Method in class HAL.GridsAndAgents.PopulationGrid2D

Diffusion(double, MultinomialCalc) - Method in class HAL.GridsAndAgents.PopulationGrid3D

Diffusion(double, MultinomialCalcLong) - Method in class HAL.GridsAndAgents.PopulationGrid1DLong

Diffusion(double, MultinomialCalcLong) - Method in class HAL.GridsAndAgents.PopulationGrid2DLong

Diffusion(double, MultinomialCalcLong) - Method in class HAL.GridsAndAgents.PopulationGrid3DLong

Diffusion(Grid1Ddouble) - Method in class HAL.GridsAndAgents.PDEGrid1D

runs diffusion with discontinuous diffusion rates

Diffusion(Grid1Ddouble, Coords1DDouble, Coords1DDouble) - Method in class HAL.GridsAndAgents.PDEGrid1D

runs diffusion with discontinuous diffusion rates

Diffusion(Grid2Ddouble, Grid2Ddouble) - Method in class HAL.GridsAndAgents.PDEGrid2D

runs diffusion with discontinuous diffusion rates

Diffusion(Grid2Ddouble, Grid2Ddouble, Coords2DDouble, Coords2DDouble, Coords2DDouble) - Method in class HAL.GridsAndAgents.PDEGrid2D

runs diffusion with discontinuous diffusion rates

Diffusion(Grid3Ddouble, Grid3Ddouble, Grid3Ddouble) - Method in class HAL.GridsAndAgents.PDEGrid3D

runs diffusion with discontinuous diffusion rates

Diffusion(Grid3Ddouble, Grid3Ddouble, Grid3Ddouble, Coords3DDouble, Coords3DDouble, Coords3DDouble, Coords3DDouble) - Method in class HAL.GridsAndAgents.PDEGrid3D

runs diffusion with discontinuous diffusion rates

Diffusion1(double[], double[], double[], int, boolean, Coords1DDouble, Coords1DDouble) - Static method in class HAL.Tools.Internal.PDEequations

Diffusion1(double[], double[], double, int, boolean, Coords1DDouble) - Static method in class HAL.Tools.Internal.PDEequations

Diffusion1(int, int, PopulationGrid1D, double, int, boolean, Coords1DInt, MultinomialCalc) - Static method in class HAL.Tools.Internal.PopulationGridPDEequations

Diffusion1ADI(double[], double[], double, int, boolean, Coords1DDouble, TdmaSolver) - Static method in class HAL.Tools.Internal.ADIequations

Diffusion1D(PopulationGrid1D, int, int, int, MultinomialCalc, Coords1DInt, Coords1DDouble, boolean, double) - Static method in class HAL.Tools.Internal.PopulationGridPDEequations

Diffusion1DL(PopulationGrid1DLong, int, int, int, MultinomialCalcLong, Coords1DInt, Coords1DDouble, boolean, double) - Static method in class HAL.Tools.Internal.PopulationGridPDEequations

Diffusion1L(long, int, PopulationGrid1DLong, double, int, boolean, Coords1DInt, MultinomialCalcLong) - Static method in class HAL.Tools.Internal.PopulationGridPDEequations

Diffusion2(double[], double[], double[], double[], int, int, boolean, boolean, Coords2DDouble, Coords2DDouble, Coords2DDouble) - Static method in class HAL.Tools.Internal.PDEequations

Diffusion2(double[], double[], double, int, int, boolean, boolean, Coords2DDouble) - Static method in class HAL.Tools.Internal.PDEequations

Diffusion2(int, int, int, int, PopulationGrid2D, double, int, int, boolean, boolean, Coords2DInt, MultinomialCalc) - Static method in class HAL.Tools.Internal.PopulationGridPDEequations

Diffusion2DADI(double[], double[], double[], double, int, int, boolean, boolean, Coords2DDouble, TdmaSolver) - Static method in class HAL.Tools.Internal.ADIequations

Diffusion2DADIBetweenAction(double[], double[], double[], double, int, int, boolean, boolean, Coords2DDouble, TdmaSolver, DoubleArrayToVoid) - Static method in class HAL.GridsAndAgents.PDEGrid2D

Diffusion2L(long, int, int, int, PopulationGrid2DLong, double, int, int, boolean, boolean, Coords2DInt, MultinomialCalcLong) - Static method in class HAL.Tools.Internal.PopulationGridPDEequations

Diffusion3(double[], double[], double[], double[], double[], int, int, int, boolean, boolean, boolean, Coords3DDouble, Coords3DDouble, Coords3DDouble, Coords3DDouble) - Static method in class HAL.Tools.Internal.PDEequations

Diffusion3(double[], double[], double, int, int, int, boolean, boolean, boolean, Coords3DDouble) - Static method in class HAL.Tools.Internal.PDEequations

Diffusion3(int, int, int, int, int, PopulationGrid3D, double, int, int, int, boolean, boolean, boolean, Coords3DInt, MultinomialCalc) - Static method in class HAL.Tools.Internal.PopulationGridPDEequations

Diffusion3DADI(double[], double[], double[], double[], double, int, int, int, boolean, boolean, boolean, Coords3DDouble, TdmaSolver) - Static method in class HAL.Tools.Internal.ADIequations

Diffusion3L(long, int, int, int, int, PopulationGrid3DLong, double, int, int, int, boolean, boolean, boolean, Coords3DInt, MultinomialCalcLong) - Static method in class HAL.Tools.Internal.PopulationGridPDEequations

DiffusionADI(double) - Method in class HAL.GridsAndAgents.PDEGrid2D

DiffusionADI(double) - Method in class HAL.GridsAndAgents.PDEGrid3D

DiffusionADI(double, double) - Method in class HAL.GridsAndAgents.PDEGrid2D

DiffusionADI(double, double) - Method in class HAL.GridsAndAgents.PDEGrid3D

DiffusionADI(double, double, DoubleArrayToVoid) - Method in class HAL.GridsAndAgents.PDEGrid2D

DiffusionADI2(boolean, double[], double[], double[], int, int, double, boolean, double) - Static method in class HAL.Tools.Internal.PDEequations

DiffusionCrank(double) - Method in class HAL.GridsAndAgents.PDEGrid1D

DiffusionCrank(double, Coords1DDouble) - Method in class HAL.GridsAndAgents.PDEGrid1D

DiffusionOperator2D(int[], int[], int, int, double, int, int, MultinomialCalc, Coords2DInt) - Static method in class HAL.Tools.Internal.PopulationGridPDEequations

DiffusionX2D(PopulationGrid2D, int, int, int, int, int, MultinomialCalc, Coords2DInt, Coords2DDouble, boolean, double) - Static method in class HAL.Tools.Internal.PopulationGridPDEequations

DiffusionX2DL(PopulationGrid2DLong, int, int, int, int, int, MultinomialCalcLong, Coords2DInt, Coords2DDouble, boolean, double) - Static method in class HAL.Tools.Internal.PopulationGridPDEequations

DiffusionX3D(PopulationGrid3D, int, int, int, int, int, int, int, MultinomialCalc, Coords3DInt, Coords3DDouble, boolean, double) - Static method in class HAL.Tools.Internal.PopulationGridPDEequations

DiffusionX3DL(PopulationGrid3DLong, int, int, int, int, int, int, int, MultinomialCalcLong, Coords3DInt, Coords3DDouble, boolean, double) - Static method in class HAL.Tools.Internal.PopulationGridPDEequations

DiffusionY2D(PopulationGrid2D, int, int, int, int, int, MultinomialCalc, Coords2DInt, Coords2DDouble, boolean, double) - Static method in class HAL.Tools.Internal.PopulationGridPDEequations

DiffusionY2DL(PopulationGrid2DLong, int, int, int, int, int, MultinomialCalcLong, Coords2DInt, Coords2DDouble, boolean, double) - Static method in class HAL.Tools.Internal.PopulationGridPDEequations

DiffusionY3D(PopulationGrid3D, int, int, int, int, int, int, int, MultinomialCalc, Coords3DInt, Coords3DDouble, boolean, double) - Static method in class HAL.Tools.Internal.PopulationGridPDEequations

DiffusionY3DL(PopulationGrid3DLong, int, int, int, int, int, int, int, MultinomialCalcLong, Coords3DInt, Coords3DDouble, boolean, double) - Static method in class HAL.Tools.Internal.PopulationGridPDEequations

DiffusionZ3D(PopulationGrid3D, int, int, int, int, int, int, int, MultinomialCalc, Coords3DInt, Coords3DDouble, boolean, double) - Static method in class HAL.Tools.Internal.PopulationGridPDEequations

DiffusionZ3DL(PopulationGrid3DLong, int, int, int, int, int, int, int, MultinomialCalcLong, Coords3DInt, Coords3DDouble, boolean, double) - Static method in class HAL.Tools.Internal.PopulationGridPDEequations

Displaced1D(double[], int, int, boolean, Coords1DDouble) - Static method in class HAL.Tools.Internal.PDEequations

Displaced1D(int[], int, int, boolean, Coords1DInt) - Static method in class HAL.Tools.Internal.PopulationGridPDEequations

DisplacedX2D(double[], int, int, int, int, boolean, Coords2DDouble) - Static method in class HAL.Tools.Internal.PDEequations

DisplacedX2D(int[], int, int, int, int, boolean, Coords2DInt) - Static method in class HAL.Tools.Internal.PopulationGridPDEequations

DisplacedX3D(double[], int, int, int, int, int, int, boolean, Coords3DDouble) - Static method in class HAL.Tools.Internal.PDEequations

DisplacedX3D(int[], int, int, int, int, int, int, boolean, Coords3DInt) - Static method in class HAL.Tools.Internal.PopulationGridPDEequations

DisplacedY2D(double[], int, int, int, int, boolean, Coords2DDouble) - Static method in class HAL.Tools.Internal.PDEequations

DisplacedY2D(int[], int, int, int, int, boolean, Coords2DInt) - Static method in class HAL.Tools.Internal.PopulationGridPDEequations

DisplacedY3D(double[], int, int, int, int, int, int, boolean, Coords3DDouble) - Static method in class HAL.Tools.Internal.PDEequations

DisplacedY3D(int[], int, int, int, int, int, int, boolean, Coords3DInt) - Static method in class HAL.Tools.Internal.PopulationGridPDEequations

DisplacedZ3D(double[], int, int, int, int, int, int, boolean, Coords3DDouble) - Static method in class HAL.Tools.Internal.PDEequations

DisplacedZ3D(int[], int, int, int, int, int, int, boolean, Coords3DInt) - Static method in class HAL.Tools.Internal.PopulationGridPDEequations

Dispose() - Method in class HAL.GridsAndAgents.Agent0D

deletes the agent

Dispose() - Method in class HAL.GridsAndAgents.AgentBase

removes the agent from the grid

Dispose() - Method in class HAL.GridsAndAgents.AgentPT1D

removes the agent from the grid

Dispose() - Method in class HAL.GridsAndAgents.AgentPT2D

Dispose() - Method in class HAL.GridsAndAgents.AgentPT3D

removes the agent from the grid

Dispose() - Method in class HAL.GridsAndAgents.AgentSQ1D

deletes the agent

Dispose() - Method in class HAL.GridsAndAgents.AgentSQ1Dunstackable

Deletes the agent

Dispose() - Method in class HAL.GridsAndAgents.AgentSQ2D

deletes the agent

Dispose() - Method in class HAL.GridsAndAgents.AgentSQ2Dunstackable

Deletes the agent

Dispose() - Method in class HAL.GridsAndAgents.AgentSQ3D

deletes the agent

Dispose() - Method in class HAL.GridsAndAgents.AgentSQ3Dunstackable

deletes the agent

DispWrap(double, double, double) - Static method in class HAL.Util

computes the minimum distance between p1 and p2, using wraparound if it is shorter

DispX(double) - Method in class HAL.GridsAndAgents.Agent1DBase

gets the X displacement from this agent to a given x position

DispX(double) - Method in class HAL.GridsAndAgents.Agent2DBase

gets the X displacement from this agent to a given x position

DispX(double) - Method in class HAL.GridsAndAgents.Agent3DBase

gets the X displacement from this agent to a given x position

DispX(double, double) - Method in interface HAL.Interfaces.Grid1D

gets the displacement from the first coorinate to the second.

DispX(double, double) - Method in interface HAL.Interfaces.Grid2D

gets the displacement from the first coorinate to the second.

DispX(double, double) - Method in interface HAL.Interfaces.Grid3D

gets the displacement from the first coorinate to the second.

DispY(double) - Method in class HAL.GridsAndAgents.Agent2DBase

gets the Y displacement from this agent to a given y position

DispY(double) - Method in class HAL.GridsAndAgents.Agent3DBase

gets the Y displacement from this agent to a given y position

DispY(double, double) - Method in interface HAL.Interfaces.Grid2D

gets the displacement from the first coorinate to the second.

DispY(double, double) - Method in interface HAL.Interfaces.Grid3D

gets the displacement from the first coorinate to the second.

DispZ(double) - Method in class HAL.GridsAndAgents.Agent3DBase

gets the Z displacement from this agent to a given z position

DispZ(double, double) - Method in interface HAL.Interfaces.Grid3D

gets the displacement from the first coorinate to the second.

Dist(double) - Method in class HAL.GridsAndAgents.Agent1DBase

gets the distance from this agent to another position

Dist(double, double) - Method in class HAL.GridsAndAgents.Agent2DBase

gets the distance from this agent to another position

Dist(double, double) - Method in interface HAL.Interfaces.Grid1D

gets the distance between two positions with or without grid wrap around (if wraparound is enabled, the shortest distance taking this into account will be returned)

Dist(double, double, double) - Method in class HAL.GridsAndAgents.Agent3DBase

gets the distance from this agent to another position

Dist(double, double, double, double) - Method in interface HAL.Interfaces.Grid2D

gets the distance between two positions with or without grid wrap around (if wraparound is enabled, the shortest distance taking this into account will be returned)

Dist(double, double, double, double) - Static method in class HAL.Util

gets the euclidean distance between (x1,y1) and (x2,y2)

Dist(double, double, double, double, double, double) - Method in interface HAL.Interfaces.Grid3D

gets the distance between two positions with or without grid wrap around (if wraparound is enabled, the shortest distance taking this into account will be returned)

Dist(double, double, double, double, double, double) - Static method in class HAL.Util

gets the euclidean distance between (x1,y1,z1) and (x2,y2,z2)

Dist(double, double, double, double, double, double, boolean, boolean) - Static method in class HAL.Util

gets the euclidean distance between (x1,y1) and (x2,y2), assuming boundaries 0,xDim and 0,yDim, and wraparound as given in the arguments

Dist(double, double, double, double, double, double, int, int, int, boolean, boolean, boolean) - Static method in class HAL.Util

gets the euclidean distance between (x1,y1,z1) and (x2,y2,z2), assuming boundaries (0,xDim),(0,yDim), and (0,zDim) and wraparound as given in the arguments

DistSquared(double) - Method in class HAL.GridsAndAgents.Agent1DBase

gets the distance squared from this agent to another position, included for completeness

DistSquared(double[], double[]) - Static method in class HAL.Util

returns the distance squared between the two position provided in any number of dimensions

DistSquared(double, double) - Method in class HAL.GridsAndAgents.Agent2DBase

gets the distance squared from this agent to another position, more efficient than Dist

DistSquared(double, double) - Method in interface HAL.Interfaces.Grid1D

gets the distance between two positions squared with or without grid wrap around

DistSquared(double, double, double) - Method in class HAL.GridsAndAgents.Agent3DBase

gets the distance squared from this agent to another position, more efficient than Dist

DistSquared(double, double, double, double) - Method in interface HAL.Interfaces.Grid2D

gets the distance squared between two positions with or without grid wrap around (if wraparound is enabled, the shortest distance taking this into account will be returned) more efficient than the Dist function above as it skips a square-root calculation.

DistSquared(double, double, double, double) - Static method in class HAL.Util

similar to dist above, but returns the distance squared

DistSquared(double, double, double, double, double, double) - Method in interface HAL.Interfaces.Grid3D

gets the distance squared between two positions with or without grid wrap around (if wraparound is enabled, the shortest distance taking this into account will be returned) more efficient than the Dist function above as it skips a square-root calculation.

DistSquared(double, double, double, double, double, double) - Static method in class HAL.Util

similar to dist above, but returns the distance squared

DistSquared(double, double, double, double, double, double, boolean, boolean) - Static method in class HAL.Util

similar to dist above, but returns the distance squared

DistSquared(double, double, double, double, double, double, int, int, int, boolean, boolean, boolean) - Static method in class HAL.Util

similar to dist above, but returns the distance squared

DistToForce(double) - Method in interface HAL.Interfaces.DistToForceMap

DistToForceMap - Interface in HAL.Interfaces

Created by bravorr on 5/31/17.

Divide(double, double[], Rand) - Method in class HAL.GridsAndAgents.SphericalAgent2D

Facilitiates modeling cell division.

Divide(double, double[], Rand) - Method in class HAL.GridsAndAgents.SphericalAgent3D

Facilitiates modeling cell division.

Divide(double, Rand) - Method in class HAL.GridsAndAgents.SphericalAgent2D

Divide(double, Rand) - Method in class HAL.GridsAndAgents.SphericalAgent3D

Double() - Method in interface HAL.Interfaces.RNG

Double() - Method in class HAL.Rand

returns a random double from 0 to 1

Double() - Method in class HAL.Tools.Internal.SplittableRN

Double(double) - Method in interface HAL.Interfaces.RNG

Double(double) - Method in class HAL.Rand

returns a random double from 0 up to bound

Double(double) - Method in class HAL.Tools.Internal.SplittableRN

Double(int) - Method in class HAL.Rand

DOUBLE_EPSILON - Static variable in class HAL.Util

DoubleArrayToDouble - Interface in HAL.Interfaces

DoubleArrayToVoid - Interface in HAL.Interfaces

doubles() - Method in class HAL.Tools.Internal.SplittableRN

Returns an effectively unlimited stream of pseudorandom double values from this generator and/or one split from it; each value is between zero (inclusive) and one (exclusive).

doubles(double, double) - Method in class HAL.Tools.Internal.SplittableRN

Returns an effectively unlimited stream of pseudorandom double values from this generator and/or one split from it; each value conforms to the given origin (inclusive) and bound (exclusive).

doubles(long) - Method in class HAL.Tools.Internal.SplittableRN

Returns a stream producing the given streamSize number of pseudorandom double values from this generator and/or one split from it; each value is between zero (inclusive) and one (exclusive).

doubles(long, double, double) - Method in class HAL.Tools.Internal.SplittableRN

Returns a stream producing the given streamSize number of pseudorandom double values from this generator and/or one split from it; each value conforms to the given origin (inclusive) and bound (exclusive).

Doubles2DDouble - Interface in HAL.Interfaces

Doubles3DDouble - Interface in HAL.Interfaces

DoublesToColor - Interface in HAL.Interfaces

Created by Rafael on 10/13/2017.

DoubleToAction - Interface in HAL.Interfaces

DoubleToColor - Interface in HAL.Interfaces

Created by Rafael on 10/13/2017.

DoubleToDouble - Interface in HAL.Interfaces

Created by Rafael on 9/18/2017.

DoubleToDoubles - Interface in HAL.Interfaces

DoubleToInt - Interface in HAL.Interfaces

Created by Rafael on 7/24/2017.

DoubleToInt(double) - Method in interface HAL.Interfaces.DoubleToInt

Draw(UIGrid) - Method in interface HAL.Interfaces.DrawFunction

Draw(UIGrid, int) - Method in interface HAL.Tools.InteractiveModel.TreatableTumor

DrawAgents(T, AgentToColorInt<Q>) - Method in class HAL.Gui.UIGrid

sets every pixel in the UIGrid by iterating over the AgentGrid2D and drawing the first agent found at each position.

DrawAgents(T, AgentToColorInt<Q>, Coords2DInt) - Method in class HAL.Gui.UIGrid

sets every pixel in the UIGrid by iterating over the AgentGrid2D and drawing the first agent found at each position.

DrawAxesLabels() - Method in class HAL.Gui.UIPlot

DrawClosestAgentsXY(T, AgentToColorInt<Q>) - Method in class HAL.Gui.UIGrid

sets every pixel in the UIGrid by drawing the closest agent (agent with lowest Z value) at each X,Y pair, positions with no agent will be skipped

DrawClosestAgentsXY(T, AgentToColorInt<Q>, Coords2DInt) - Method in class HAL.Gui.UIGrid

sets every pixel in the UIGrid by drawing the closest agent (agent with lowest Z value) at each X,Y pair, the background color will be used when no agent is found

DrawClosestAgentsXZ(T, AgentToColorInt<Q>) - Method in class HAL.Gui.UIGrid

sets every pixel in the UIGrid by drawing the closest agent (agent with lowest Y value) at each X,Z pair, positions with no agent will be skipped

DrawClosestAgentsXZ(T, AgentToColorInt<Q>, Coords2DInt) - Method in class HAL.Gui.UIGrid

sets every pixel in the UIGrid by drawing the closest agent (agent with lowest Y value) at each X,Z pair, the background color will be used when no agent is found

DrawClosestAgentsYZ(T, AgentToColorInt<Q>) - Method in class HAL.Gui.UIGrid

sets every pixel in the UIGrid by drawing the closest agent (agent with lowest X value) at each Y,Z pair, positions with no agent will be skipped

DrawClosestAgentsYZ(T, AgentToColorInt<Q>, Coords2DInt) - Method in class HAL.Gui.UIGrid

sets every pixel in the UIGrid by drawing the closest agent (agent with lowest X value) at each Y,Z pair, the background color will be used when no agent is found

DrawFunction - Interface in HAL.Interfaces

DrawFurthestAgentsXY(T, AgentToColorInt<Q>) - Method in class HAL.Gui.UIGrid

sets every pixel in the UIGrid by drawing the furthest agent (agent with highest Z value) at each X,Y pair, positions with no agent will be skipped

DrawFurthestAgentsXY(T, AgentToColorInt<Q>, Coords2DInt) - Method in class HAL.Gui.UIGrid

sets every pixel in the UIGrid by drawing the furthest agent (agent with highest Z value) at each X,Y pair, the background color will be used when no agent is found

DrawFurthestAgentsXZ(T, AgentToColorInt<Q>) - Method in class HAL.Gui.UIGrid

sets every pixel in the UIGrid by drawing the furthest agent (agent with highest Y value) at each X,Z pair, positions with no agent will be skipped

DrawFurthestAgentsXZ(T, AgentToColorInt<Q>, Coords2DInt) - Method in class HAL.Gui.UIGrid

sets every pixel in the UIGrid by drawing the furthest agent (agent with highest Y value) at each X,Z pair, the background color will be used when no agent is found

DrawFurthestAgentsYZ(T, AgentToColorInt<Q>) - Method in class HAL.Gui.UIGrid

sets every pixel in the UIGrid by drawing the furthest agent (agent with highest X value) at each Y,Z pair, positions with no agent will be skipped

DrawFurthestAgentsYZ(T, AgentToColorInt<Q>, Coords2DInt) - Method in class HAL.Gui.UIGrid

sets every pixel in the UIGrid by drawing the furthest agent (agent with highest X value) at each Y,Z pair, the background color will be used when no agent is found

DrawIntensityLines() - Method in class HAL.Tools.InteractiveModel.InteractiveModel

DrawPDEGrid(PDEGrid2D, DoubleToInt) - Method in class HAL.Gui.UIGrid

sets every pixel in the UIGrid by reading values from the PDEGrid2D

DrawPDEGridXY(PDEGrid3D, DoubleToInt) - Method in class HAL.Gui.UIGrid

sets every pixel in the UIGrid by reading values from the PDEGrid3D, values are summed over the Z dimension

DrawPDEGridXZ(PDEGrid3D, DoubleToInt) - Method in class HAL.Gui.UIGrid

sets every pixel in the UIGrid by reading values from the PDEGrid3D, values are summed over the Y dimension

DrawPDEGridYZ(PDEGrid3D, DoubleToInt) - Method in class HAL.Gui.UIGrid

sets every pixel in the UIGrid by reading values from the PDEGrid3D, values are summed over the X dimension

DrawTimeline() - Method in class HAL.Tools.InteractiveModel.InteractiveModel

DrawWell<T> - Interface in HAL.Tools.MultiWellExperiment

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